Strain identifier
BacDive ID: 162034
Type strain: 
Species: Tessaracoccus defluvii
Strain history: S.-S. Lee; KEMB, Kyonggi Univ., South Korea; LNB-140.
NCBI tax ID(s): 1285901 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 162034
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Tessaracoccus defluvii JCM 17540 is a mesophilic bacterium that was isolated from Aeration tank in a sewage treatment plant.
NCBI tax id
- NCBI tax id: 1285901
- Matching level: species
strain history
- @ref: 67770
- history: S.-S. Lee; KEMB, Kyonggi Univ., South Korea; LNB-140.
doi: 10.13145/bacdive162034.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Propionibacteriaceae
- genus: Tessaracoccus
- species: Tessaracoccus defluvii
- full scientific name: Tessaracoccus defluvii Srinivasan et al. 2017
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Propionibacteriales
family: Propionibacteriaceae
genus: Tessaracoccus
species: Tessaracoccus defluvii
full scientific name: Tessaracoccus defluvii Srinivasan et al. 2017
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | positive | 99.5 | |
| 125438 | 96.5 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H4)
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Aeration tank in a sewage treatment plant
- geographic location: near Gwacheon
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_142073.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15360;96_343;97_382;98_94394;99_142073&stattab=map
- Last taxonomy: Tessaracoccus defluvii subclade
- 16S sequence: KC295452
- Sequence Identity:
- Total samples: 1159
- soil counts: 3
- aquatic counts: 1054
- animal counts: 87
- plant counts: 15
Sequence information
16S sequences
- @ref: 67770
- description: Tessaracoccus defluvii strain LNB-140 16S ribosomal RNA gene, partial sequence
- accession: KC295452
- length: 1460
- database: nuccore
- NCBI tax ID: 1285901
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Tessaracoccus defluvii JCM 17540 | GCA_014489575 | complete | ncbi | 1285901 |
| 66792 | Tessaracoccus defluvii strain JCM 17540 | 1285901.3 | complete | patric | 1285901 |
| 66792 | Tessaracoccus defluvii JCM 17540 | 2897428245 | complete | img | 1285901 |
GC content
- @ref: 67770
- GC-content: 67.1
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 86.4 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 99.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 87.6 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 63.5 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 89.66 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 85.199 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 57.413 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 71.991 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 91.125 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 96.5 | no |
External links
@ref: 67770
culture collection no.: JCM 17540, KEMB 5401-076
literature
- topic: Phylogeny
- Pubmed-ID: 27639709
- title: Tessaracoccus defluvii sp. nov., isolated from an aeration tank of a sewage treatment plant.
- authors: Srinivasan S, Sundararaman A, Lee SS
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-016-0766-6
- year: 2016
- mesh: Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Phylogeny, Propionibacteriaceae/classification/genetics/*isolation & purification/metabolism, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sewage/*microbiology
- topic2: Metabolism
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |