Name: Sphingobium indicum JCM 17232
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161988

Type strain:

Species: Sphingobium indicum

Culture col. no.: JCM 17232, NBRC 101211

Strain history: Y. Nagata UT26S.

NCBI tax ID(s): 332055 (species)

SI-ID 307871

NBRC 101211

Other strains from Sphingobium indicum

S. indicum B90A, DSM 16412, CCM 7286, MTCC ... (type strain)
S. indicum UT26, DSM 16413, CCM 7287, MTCC ...
S. indicum Sp+, DSM 26779, CCM 7288, MTCC ...

Section

Sphingobium indicum JCM 17232 is a mesophilic bacterium that was isolated from Soil of experimental field in the University of Tokyo.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingobium*
	Species	**Sphingobium indicum**
	Full Scientific Name (LPSN)	Sphingobium indicum Pal et al. 2005

	Synonym	Sphingobium chinhatense
	Synonym	Sphingobium japonicum
	Synonym	Sphingobium francense
	Synonym	Sphingobium lucknowense

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil of experimental field in the University of Tokyo
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tokyo
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingobium japonicum UT26S	452662.35	plasmid	PATRIC	452662 tax ID	*
[Ref.: #66792]	Sphingobium japonicum UT26S	452662.33	plasmid	PATRIC	452662 tax ID	*
[Ref.: #66792]	Sphingobium japonicum UT26S	452662.34	plasmid	PATRIC	452662 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingobium japonicum UT26S PATRIC: 452662.35
[Ref.: #69480]	gram-positive	no	91.134	no
[Ref.: #69480]	anaerobic	no	93.681	no
[Ref.: #69480]	halophile	no	70.641	no
[Ref.: #69480]	spore-forming	no	97.294	no
[Ref.: #69480]	glucose-util	yes	86.199	no
[Ref.: #69480]	aerobic	no	71.665	no
[Ref.: #69480]	flagellated	no	89.564	no
[Ref.: #69480]	thermophile	no	98.333	yes
[Ref.: #69480]	motile	no	86.476	no
[Ref.: #69480]	glucose-ferment	yes	73.625	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 17232, NBRC 101211

[Ref.: #113484]

SI-ID 307871

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#113484

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID307871.1 )

* These data were automatically processed and therefore are not curated

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Sphingobium japonicum UT26S

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