Name: Corynebacterium nuruki S6-4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161956

Type strain:

Species: Corynebacterium nuruki

Strain Designation: S6-4

Culture col. no.: JCM 17162, KACC 15032, DSM 45695

Strain history: <- S. W. Kwon, KACC; KACC 15032

NCBI tax ID(s): 863239 (strain), 1032851 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Corynebacterium nuruki S6-4 is a mesophilic bacterium that was isolated from Nuruk, an alcohol fermentation starter of traditional Korean rice wine.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium nuruki**
	Full Scientific Name (LPSN)	Corynebacterium nuruki Shin et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	positive Confidence in %93.675
[Ref.: #125439]	Gram stain	positive Confidence in %99.5

[Ref.: #125438]	Motility	no Confidence in %93.5
[Ref.: #125439]	Motility	no Confidence in %92.4

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-9(H₂), MK-9, MK-8(H₂), MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Nuruk, an alcohol fermentation starter of traditional Korean rice wine

[Ref.: #18071]	Sample type/isolated from	nuruk, an alcohol fermentation starter of traditional Korean wine
[Ref.: #18071]	Country	Republic of Korea
[Ref.: #18071]	Country ISO 3 Code	KOR
[Ref.: #18071]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence HM165487 (>99% sequence identity) for Corynebacterium nuruki subclade from Microbeatlas

Aquatic Samples	244
Soil Samples	189
Animal Samples	2269
Plant Samples	85
Total Samples	2787

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18071]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Corynebacterium nuruki S6-4 16S ribosomal RNA gene, partial sequence	HM165487	1443	GenBank ENA	863239 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Corynebacterium nuruki S6-4	GCA_000213935	contig	GenBank ENA	863239 tax ID
[Ref.: #66792]	Corynebacterium nuruki S6-4	863239.11	complete	PATRIC	863239 tax ID	*
[Ref.: #66792]	Corynebacterium nuruki S6-4, JCM 17162	2547132106	draft	JGI IMG/M	863239 tax ID	*

[Ref.: #67770]	GC-content	73.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	69.5 mol%	genome sequence analysis
[Ref.: #18071]	GC-content	73.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium nuruki S6-4 PATRIC: 863239.11
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	93.675	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	95.222	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	80.593	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	75.08	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.5	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	93.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium nuruki S6-4 PATRIC: 863239.11
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	62.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	92.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.5
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	84.9

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 17162, KACC 15032, DSM 45695

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium nuruki sp. nov., isolated from an alcohol fermentation starter.	Shin NR, Jung MJ, Kim MS, Roh SW, Nam YD, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.027763-0	2010	*

References

#18071

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45695

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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