Strain identifier
BacDive ID: 161956
Type strain: 
Species: Corynebacterium nuruki
Strain history: J.-W. Bae S6-4.
NCBI tax ID(s): 863239 (strain), 1032851 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 161956
keywords: genome sequence, 16S sequence, Bacteria, Gram-positive
description: Corynebacterium nuruki JCM 17162 is a Gram-positive bacterium that was isolated from Nuruk, an alcohol fermentation starter of traditional Korean rice wine.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1032851 | species |
| 863239 | strain |
strain history
- @ref: 67770
- history: J.-W. Bae S6-4.
doi: 10.13145/bacdive161956.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium nuruki
- full scientific name: Corynebacterium nuruki Shin et al. 2011
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium nuruki
full scientific name: Corynebacterium nuruki Shin et al. 2011
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 93.675 | |
| 69480 | 93.5 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H2), MK-9, MK-8(H2), MK-8
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Nuruk, an alcohol fermentation starter of traditional Korean rice wine
taxonmaps
- @ref: 69479
- File name: preview.99_4874.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_288;97_318;98_3648;99_4874&stattab=map
- Last taxonomy: Corynebacterium nuruki subclade
- 16S sequence: HM165487
- Sequence Identity:
- Total samples: 2787
- soil counts: 189
- aquatic counts: 244
- animal counts: 2269
- plant counts: 85
Sequence information
16S sequences
- @ref: 67770
- description: Corynebacterium nuruki S6-4 16S ribosomal RNA gene, partial sequence
- accession: HM165487
- length: 1443
- database: nuccore
- NCBI tax ID: 863239
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Corynebacterium nuruki S6-4 | 863239.11 | complete | patric | 863239 |
| 66792 | Corynebacterium nuruki S6-4, JCM 17162 | 2547132106 | draft | img | 863239 |
| 67770 | Corynebacterium nuruki S6-4 | GCA_000213935 | contig | ncbi | 863239 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 67770 | 73.6 | thermal denaturation, midpoint method (Tm) |
| 67770 | 69.5 | genome sequence analysis |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 68 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 93.675 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.222 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 80.593 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 75.08 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.5 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 93.5 | no |
External links
@ref: 67770
culture collection no.: JCM 17162, KACC 15032
literature
- topic: Phylogeny
- Pubmed-ID: 21075904
- title: Corynebacterium nuruki sp. nov., isolated from an alcohol fermentation starter.
- authors: Shin NR, Jung MJ, Kim MS, Roh SW, Nam YD, Bae JW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.027763-0
- year: 2010
- mesh: Alcohols/*metabolism, Amino Acids/analysis, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Catalase/metabolism, Cell Wall/chemistry, Cluster Analysis, Corynebacterium/*classification/genetics/*isolation & purification/physiology, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fermentation, *Food Microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Peptidoglycan/chemistry, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature
- topic2: Metabolism
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |