Actimicrobium antarcticum (KCTC 23040, JCM 16673)

Name: Actimicrobium antarcticum (KCTC 23040, JCM 16673)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161857

Type strain

Culture col. no. KCTC 23040 JCM 16673

NCBI tax ID(s) 1051899

Special Collections JCM KCTC

History JCM <-- Y. M. Lee KOPRI 25157.

Links

Actimicrobium antarcticum JCM 16673 is a bacterium that was isolated from Coastal seawater.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 24553

KCTC 23040,JCM 16673

@ref 20215

Last LPSN update 2026-05-29 08:44:47

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Oxalobacteraceae

Genus Actimicrobium

Species Actimicrobium antarcticum

Full scientific name Actimicrobium antarcticum Kim et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.675

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	15

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.441

Spore formation

@ref	Spore formation	Confidence
125439		99.757

Observation

67770

Observationquinones: Q-8

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Coastal seawater	Antarctica	ATA	Antarctica

Taxonmaps

69479

Global distribution of 16S sequence HQ699437 (>99% sequence identity) for Actimicrobium antarcticum subclade from Microbeatlas

Aquatic Samples	64
Soil Samples	56
Animal Samples	15
Plant Samples	0
Total Samples	135

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953674v1 assembly for Actimicrobium antarcticum JCM 16673	scaffold	GCA_039536745	1051899	72.85

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Actimicrobium antarcticum strain KOPRI 25157 16S ribosomal RNA gene, partial sequence	HQ699437	1455		1051899

GC content

@ref	GC-content (mol%)	Method
67770	65.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3953674v1 assembly for Actimicrobium antarcticum JCM 16673
NCBI: GCA_039536745

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.44	no
125439	motility	BacteriaNetⓘ	yes	84.76	no
125439	gram_stain	BacteriaNetⓘ	negative	99.68	no
125439	spore_formation	BacteriaNetⓘ	no	99.76	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actimicrobium antarcticum gen. nov., sp. nov., of the family Oxalobacteraceae, isolated from Antarctic coastal seawater.	Kim EH, Jeong HJ, Lee YK, Moon EY, Cho JC, Lee HK, Hong SG	Curr Microbiol	10.1007/s00284-011-9962-9	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Actimicrobium antarcticum (KCTC 23040, JCM 16673)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039536745

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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