General

@ref: 67770

BacDive-ID: 161857

keywords: 16S sequence, Bacteria

description: Actimicrobium antarcticum JCM 16673 is a bacterium that was isolated from Coastal seawater.

NCBI tax id

• NCBI tax id: 1051899
• Matching level: species

strain history

• @ref: 67770
• history: Y. M. Lee KOPRI 25157.

doi: 10.13145/bacdive161857.20240510.9

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Betaproteobacteria
• order: Burkholderiales
• family: Oxalobacteraceae
• genus: Actimicrobium
• species: Actimicrobium antarcticum
• full scientific name: Actimicrobium antarcticum Kim et al. 2021

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Actimicrobium

species: Actimicrobium antarcticum

full scientific name: Actimicrobium antarcticum Kim et al. 2021

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 15

Physiology and metabolism

observation

• @ref: 67770
• observation: quinones: Q-8

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Coastal seawater
• country: Antarctica
• origin.country: ATA
• continent: Antarctica

taxonmaps

• @ref: 69479
• File name: preview.99_46515.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_2343;97_23264;98_33624;99_46515&stattab=map
• Last taxonomy: Actimicrobium antarcticum subclade
• 16S sequence: HQ699437
• Sequence Identity:
• Total samples: 135
• soil counts: 56
• aquatic counts: 64
• animal counts: 15

Sequence information

16S sequences

• @ref: 67770
• description: Actimicrobium antarcticum strain KOPRI 25157 16S ribosomal RNA gene, partial sequence
• accession: HQ699437
• length: 1455
• database: nuccore
• NCBI tax ID: 1051899

GC content

• @ref: 67770
• GC-content: 65.9
• method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 16673, KCTC 23040

literature

• topic: Phylogeny
• Pubmed-ID: 21674165
• title: Actimicrobium antarcticum gen. nov., sp. nov., of the family Oxalobacteraceae, isolated from Antarctic coastal seawater.
• authors: Kim EH, Jeong HJ, Lee YK, Moon EY, Cho JC, Lee HK, Hong SG
• journal: Curr Microbiol
• DOI: 10.1007/s00284-011-9962-9
• year: 2011
• mesh: Aerobiosis, Antarctic Regions, Base Composition, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Oxalobacteraceae/*classification/genetics/*isolation & purification/physiology, Oxidoreductases/metabolism, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Temperature
• topic2: Metabolism

Reference