Name: Halostagnicola alkaliphila JCM 16592
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161829

Type strain:

Species: Halostagnicola alkaliphila

Culture col. no.: JCM 16592, CECT 7631

Strain history: S. Nagaoka 167-74.

NCBI tax ID(s): 691825 (species)

SI-ID 378210

CECT 7631, JCM 16592

Special Collections

Section

Halostagnicola alkaliphila JCM 16592 is an archaeon that was isolated from Commercial rock salt imported from Hubei Province.

16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Natrialbales*
	Family	*Natrialbaceae*
	Genus	*Halostagnicola*
	Species	**Halostagnicola alkaliphila**
	Full Scientific Name (LPSN)	Halostagnicola alkaliphila Nagaoka et al. 2011

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Commercial rock salt imported from Hubei Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB533255 (>99% sequence identity) for Halostagnicola from Microbeatlas

Aquatic Samples	9
Soil Samples	2
Animal Samples	3
Plant Samples
Total Samples	14

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halostagnicola alkaliphila gene for 16S rRNA, partial sequence	AB533255	1434	GenBank ENA	691825 tax ID
[Ref.: #124043]	Halostagnicola alkaliphila gene for 16S rRNA, complete sequence, strain: JCM 16592.	AB663439	1474	GenBank ENA	691825 tax ID	*

[Ref.: #67770]

GC-content

60.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 16592, CECT 7631

[Ref.: #113474]

SI-ID 378210

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halostagnicola bangensis sp. nov., an alkaliphilic haloarchaeon from a soda lake.	Corral P, Corcelli A, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.000006	2014	*
Phylogeny	Halostagnicola alkaliphila sp. nov., an alkaliphilic haloarchaeon from commercial rock salt.	Nagaoka S, Minegishi H, Echigo A, Shimane Y, Kamekura M, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.023119-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#113474

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID378210.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Halostagnicola alkaliphila in external resources:
SILVA
BRENDA
PANGAEA
GBIF