Name: Streptomyces paromomycinus DSM 41429
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16182

Type strain:

Species: Streptomyces paromomycinus

Culture col. no.: DSM 41429, ATCC 14827, IPV 1982, JCM 4541, KCC S-0541, NRRL 2455, CBS 289.60, CGMCC 4.1760, IFO 15454, JCM 4871, NBIMCC 1699, NBRC 15454, VKM Ac-605

Strain history: KCC S-0541 <-- IPV 1982 <-- NRRL 2455 <-- Parke, Davis & Co.; PD 04998.

NCBI tax ID(s): 92743 (species)

SI-ID 44481

ATCC 14827, NRRL 2455, DSM 41429, JCM 4541, IFO 15454, VKM Ac-605, JCM 4871, NRRL B-2455, CBS 289.60, NBRC 15454, KACC 20077, NBIMCC 1699, CGMCC 4.1760

Other strains from Streptomyces paromomycinus

S. paromomycinus DSM 41210, IMRU 3895

Section

Streptomyces paromomycinus DSM 41429 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces paromomycinus**
	Full Scientific Name (LPSN)	Streptomyces paromomycinus (Coffey et al. 1959) Komaki and Tamura 2019

Synonym

Streptomyces rimosus subsp. paromomycinus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.115

[Ref.: #69274]	Colony color	Beige (1001)
[Ref.: #69274]	Cultivation medium used	ISP 2

[Ref.: #69274]	Colony color	Beige (1001)
[Ref.: #69274]	Cultivation medium used	ISP 6

[Ref.: #69274]	Colony color	Beige (1001)
[Ref.: #69274]	Cultivation medium used	suter with tyrosine

[Ref.: #69274]	Colony color	Beige (1001)
[Ref.: #69274]	Cultivation medium used	suter without tyrosine

[Ref.: #69274]	Colony color	Ivory (1014)
[Ref.: #69274]	Cultivation medium used	ISP 4

[Ref.: #69274]	Colony color	Ochre yellow (1024)
[Ref.: #69274]	Cultivation medium used	ISP 5

[Ref.: #69274]	Colony color	Ochre yellow (1024)
[Ref.: #69274]	Cultivation medium used	ISP 7

[Ref.: #69274]	Colony color	Sand yellow (1002)
[Ref.: #69274]	Cultivation medium used	ISP 3

[Ref.: #69274]	Pigment production	no
[Ref.: #69274]	Pigment name	Melanin
[Ref.: #69274]	Pigment production	yes
[Ref.: #69274]	Pigmentation color	Sand yellow (1002)
[Ref.: #69274]	Pigment name	soluble pigment

[Ref.: #69274]	Multicellular complex forming ability	yes
[Ref.: #69274]	Multicellular complex name	Aerial mycelium
[Ref.: #69274]	Multicellular complex color	Traffic white (9016)
[Ref.: #69274]	Medium Name (multicellularity)	ISP 2

[Ref.: #69274]	Multicellular complex forming ability	yes
[Ref.: #69274]	Multicellular complex name	Aerial mycelium
[Ref.: #69274]	Multicellular complex color	Cream (9001)
[Ref.: #69274]	Medium Name (multicellularity)	ISP 3

[Ref.: #69274]	Multicellular complex forming ability	yes
[Ref.: #69274]	Multicellular complex name	Aerial mycelium
[Ref.: #69274]	Multicellular complex color	Traffic white (9016)
[Ref.: #69274]	Medium Name (multicellularity)	ISP 4

[Ref.: #69274]	Multicellular complex forming ability	yes
[Ref.: #69274]	Multicellular complex name	Aerial mycelium
[Ref.: #69274]	Multicellular complex color	Cream (9001)
[Ref.: #69274]	Medium Name (multicellularity)	ISP 5

[Ref.: #69274]	Multicellular complex forming ability	yes
[Ref.: #69274]	Multicellular complex name	Aerial mycelium
[Ref.: #69274]	Multicellular complex color	Traffic white (9016)
[Ref.: #69274]	Medium Name (multicellularity)	ISP 6

[Ref.: #69274]	Multicellular complex forming ability	yes
[Ref.: #69274]	Multicellular complex name	Aerial mycelium
[Ref.: #69274]	Multicellular complex color	Cream (9001)
[Ref.: #69274]	Medium Name (multicellularity)	ISP 7

[Ref.: #69274]	Multicellular complex forming ability	yes
[Ref.: #69274]	Multicellular complex name	Aerial mycelium
[Ref.: #69274]	Multicellular complex color	Traffic white (9016)
[Ref.: #69274]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69274]	Multicellular complex forming ability	yes
[Ref.: #69274]	Multicellular complex name	Aerial mycelium
[Ref.: #69274]	Multicellular complex color	Traffic white (9016)
[Ref.: #69274]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69274]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69274]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69274]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69274]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10293]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10293]

Culture medium growth

[Ref.: #10293]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10293]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #10293]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #10293]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #10293]

Name of produced compound

paramomycin

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69274]		NaCl		growth	0-10	%

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₄), MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69274]	arabinose ChEBI	-	growth
[Ref.: #69274]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69274]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69274]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69274]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69274]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #69274]	raffinose ChEBI	+/-	growth
[Ref.: #69274]	rhamnose ChEBI	-	growth
[Ref.: #69274]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69274]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67770]		paromomycin ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69274]	3768	+	-	+	+	-	-	-	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69274]	5952	not determinedn.d.	+	+	+/-	+/-	+	+	+/-	+	+/-	+	+	+	-	-	+/-	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10293]	Sample type/isolated from	soil
[Ref.: #10293]	Country	Colombia
[Ref.: #10293]	Country ISO 3 Code	COL
[Ref.: #10293]	Continent	Middle and South America

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Colombia
[Ref.: #67770]	Country ISO 3 Code	COL
[Ref.: #67770]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10293]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces rimosus subsp. paromomycinus strain CGMCC 4.1760 16S ribosomal RNA gene, partial sequence	JN566027	1496	ENA	92743 tax ID	*
[Ref.: #20218]	Streptomyces rimosus subsp. paromomycinus 16S rRNA gene, type strain DSM 41429T	AJ621610	1496	ENA	92743 tax ID	*
[Ref.: #20218]	Streptomyces rimosus subsp. paromomycinus gene for 16S rRNA, partial sequence, strain: NBRC 15454	AB184680	1480	ENA	92743 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces paromomycinus NBRC 15454	GCA_003865155	contig	GenBank	92743 tax ID
[Ref.: #66792]	Streptomyces rimosus subsp. paromomycinus strain NBRC 15454	92743.3	wgs	PATRIC	92743 tax ID	*
[Ref.: #66792]	Streptomyces rimosus paromomycinus NRRL 2455	2582581347	draft	JGI IMG/M	92743 tax ID	*

[Ref.: #67770]

GC-content

72 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces rimosus subsp. paromomycinus strain NBRC 15454 PATRIC: 92743.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces rimosus subsp. paromomycinus strain NBRC 15454 PATRIC: 92743.3
[Ref.: #69480]	motile	no	93.49	no
[Ref.: #69480]	flagellated	no	97.689	no
[Ref.: #69480]	gram-positive	yes	88.992	no
[Ref.: #69480]	anaerobic	no	98.982	no
[Ref.: #69480]	halophile	no	94.624	no
[Ref.: #69480]	spore-forming	yes	95.833	no
[Ref.: #69480]	glucose-util	yes	89	yes
[Ref.: #69480]	aerobic	yes	91.744	no
[Ref.: #69480]	thermophile	no	98.282	no
[Ref.: #69480]	glucose-ferment	no	90.758	no

Availability in culture collections External links

[Ref.: #10293]

Culture collection no.

DSM 41429, ATCC 14827, IPV 1982, JCM 4541, KCC S-0541, NRRL 2455, CBS 289.60, CGMCC 4.1760, IFO 15454, JCM 4871, NBIMCC 1699, NBRC 15454, VKM Ac-605

[Ref.: #85245]

SI-ID 44481

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Streptomyces rimosus subsp. paromomycinus as Streptomyces paromomycinus sp. nov.	Komaki H, Tamura T	Int J Syst Evol Microbiol	10.1099/ijsem.0.003545	2019	*

References

#10293

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41429

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69274

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85245

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44481.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces rimosus subsp. paromomycinus strain NBRC 15454

Streptomyces rimosus subsp. paromomycinus strain NBRC 15454

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