Name: Streptomyces inusitatus T-41575
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16183

Type strain:

Species: Streptomyces inusitatus

Strain Designation: T-41575

Culture col. no.: DSM 41441, ATCC 33341, CBS 196.78, IFO 13601, JCM 4988, KCC S-0988, NBRC 13601, NRRL B-16929

Strain history: KCC S-0988 <-- T. Hasegawa T-41575.

NCBI tax ID(s): 68221 (species)

SI-ID 92960

ATCC 33341, IFO 13601, DSM 41441, JCM 4988, NRRL B-16929, CBS 196.78, NBRC 13601, LMG 19955

Section

Streptomyces inusitatus T-41575 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces inusitatus**
	Full Scientific Name (LPSN)	Streptomyces inusitatus Hasegawa et al. 1978 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.792

[Ref.: #18685]	Colony color	Beige
[Ref.: #18685]	Incubation period	10-14 days
[Ref.: #18685]	Cultivation medium used	ISP 2

[Ref.: #18685]	Colony color	Beige
[Ref.: #18685]	Incubation period	10-14 days
[Ref.: #18685]	Cultivation medium used	ISP 3

[Ref.: #18685]	Colony color	Beige
[Ref.: #18685]	Incubation period	10-14 days
[Ref.: #18685]	Cultivation medium used	ISP 4

[Ref.: #18685]	Colony color	Yellow
[Ref.: #18685]	Incubation period	10-14 days
[Ref.: #18685]	Cultivation medium used	ISP 5

[Ref.: #18685]	Colony color	Beige
[Ref.: #18685]	Incubation period	10-14 days
[Ref.: #18685]	Cultivation medium used	ISP 6

[Ref.: #18685]	Colony color	Beige
[Ref.: #18685]	Incubation period	10-14 days
[Ref.: #18685]	Cultivation medium used	ISP 7

[Ref.: #18685]	Multicellular complex forming ability	yes
[Ref.: #18685]	Multicellular complex name	Aerial Mycelium
[Ref.: #18685]	Multicellular complex color	Blue grey (7031)
[Ref.: #18685]	Medium Name (multicellularity)	ISP 2

[Ref.: #18685]	Multicellular complex forming ability	yes
[Ref.: #18685]	Multicellular complex name	Aerial Mycelium
[Ref.: #18685]	Multicellular complex color	Blue
[Ref.: #18685]	Medium Name (multicellularity)	ISP 3

[Ref.: #18685]	Multicellular complex forming ability	no
[Ref.: #18685]	Medium Name (multicellularity)	ISP 4

[Ref.: #18685]	Multicellular complex forming ability	yes
[Ref.: #18685]	Multicellular complex name	Aerial Mycelium
[Ref.: #18685]	Multicellular complex color	White
[Ref.: #18685]	Medium Name (multicellularity)	ISP 5

[Ref.: #18685]	Multicellular complex forming ability	no
[Ref.: #18685]	Medium Name (multicellularity)	ISP 6

[Ref.: #18685]	Multicellular complex forming ability	yes
[Ref.: #18685]	Multicellular complex name	Aerial Mycelium
[Ref.: #18685]	Multicellular complex color	Blue grey (7031)
[Ref.: #18685]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10306]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10306]

Culture medium growth

[Ref.: #10306]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10306]

Culture medium composition

expand / minimize

[Ref.: #18685]

Culture medium

ISP 2

[Ref.: #18685]

Culture medium growth

[Ref.: #18685]

Culture medium composition

expand / minimize

[Ref.: #18685]

Culture medium

ISP 3

[Ref.: #18685]

Culture medium growth

[Ref.: #18685]

Culture medium composition

expand / minimize

[Ref.: #18685]

Culture medium

ISP 4

[Ref.: #18685]

Culture medium growth

[Ref.: #18685]

Culture medium composition

expand / minimize

[Ref.: #18685]

Culture medium

ISP 6

[Ref.: #18685]

Culture medium growth

[Ref.: #18685]

Culture medium composition

expand / minimize

[Ref.: #18685]

Culture medium

ISP 7

[Ref.: #18685]

Culture medium growth

[Ref.: #18685]

Culture medium composition

expand / minimize

[Ref.: #18685]

Culture medium

ISP 5

[Ref.: #18685]

Culture medium growth

[Ref.: #18685]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #10306]	growth	28 °C
[Ref.: #18685]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #10306]	Temperature range	mesophilic
[Ref.: #18685]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #18685]	Spore description	Formation of spore chains, spore surface smooth
[Ref.: #18685]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #10306]

Name of produced compound

oxamycetin

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #67770]	oxamicetin	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18685]	193	-	+	+	+	+	-	-	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10306]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Asuka Village, Nara Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18685]	Biosafety level	1	German classification
[Ref.: #10306]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces inusitatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4988	D44424	121	ENA	68221 tax ID	*
[Ref.: #20218]	Streptomyces inusitatus 16S rRNA gene, type strain LMG 19955	AJ781340	1469	ENA	68221 tax ID	*
[Ref.: #20218]	Streptomyces inusitatus gene for 16S rRNA, partial sequence, strain: NBRC 13601	AB184445	1474	ENA	68221 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces inusitatus JCM 4988	GCA_014651115	scaffold	GenBank	68221 tax ID	*
[Ref.: #66792]	Streptomyces inusitatus strain JCM 4988	68221.3	wgs	PATRIC	68221 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces inusitatus JCM 4988 NCBI: GCA_014651115.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces inusitatus JCM 4988 NCBI: GCA_014651115.1
[Ref.: #69480]	flagellated	no	97.721	no
[Ref.: #69480]	gram-positive	yes	88.333	no
[Ref.: #69480]	anaerobic	no	98.85	no
[Ref.: #69480]	aerobic	yes	92.009	no
[Ref.: #69480]	halophile	no	94.02	no
[Ref.: #69480]	spore-forming	yes	92.238	yes
[Ref.: #69480]	thermophile	no	98.186	yes
[Ref.: #69480]	glucose-util	yes	87.134	no
[Ref.: #69480]	motile	no	94.136	no
[Ref.: #69480]	glucose-ferment	no	91.572	no

Availability in culture collections External links

[Ref.: #10306]

Culture collection no.

DSM 41441, ATCC 33341, CBS 196.78, IFO 13601, JCM 4988, KCC S-0988, NBRC 13601, NRRL B-16929

[Ref.: #85246]

SI-ID 92960

References

#10306

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41441

#18685

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85246

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92960.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces inusitatus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Streptomyces inusitatus JCM 4988

Streptomyces inusitatus JCM 4988

Change proposal

Change proposal