Name: Streptomyces lomondensis DSM 41428
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16180

Type strain:

Species: Streptomyces lomondensis

Culture col. no.: DSM 41428, ATCC 25299, JCM 4866, KCC S-0866, NCIB 10094, NRRL 3252, BCRC 12208, CGMCC 4.1746, IFO 15426, NBRC 15426, NCIMB 10094

Strain history: KCC S-0866 <-- Upjohn Co., USA; UC 5022.

NCBI tax ID(s): 68229 (species)

SI-ID 265482

ATCC 25299, NCIB 10094, NRRL 3252, DSM 41428, JCM 4866, CCRC 12208, IFO 15426, NCIMB 10094, NBRC 15426, BCRC 12208, CGMCC 4.1746

Special Collections

Section

Streptomyces lomondensis DSM 41428 is a spore-forming bacterium that builds an aerial mycelium and was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces lomondensis**
	Full Scientific Name (LPSN)	Streptomyces lomondensis Johnson and Dietz 1969 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #19497]	Colony color	Orange
[Ref.: #19497]	Incubation period	10-14 days
[Ref.: #19497]	Cultivation medium used	ISP 2

[Ref.: #19497]	Colony color	Red
[Ref.: #19497]	Incubation period	10-14 days
[Ref.: #19497]	Cultivation medium used	ISP 3

[Ref.: #19497]	Colony color	Brown
[Ref.: #19497]	Incubation period	10-14 days
[Ref.: #19497]	Cultivation medium used	ISP 4

[Ref.: #19497]	Colony color	Brown
[Ref.: #19497]	Incubation period	10-14 days
[Ref.: #19497]	Cultivation medium used	ISP 5

[Ref.: #19497]	Colony color	Brown
[Ref.: #19497]	Incubation period	10-14 days
[Ref.: #19497]	Cultivation medium used	ISP 6

[Ref.: #19497]	Colony color	Black
[Ref.: #19497]	Incubation period	10-14 days
[Ref.: #19497]	Cultivation medium used	ISP 7

[Ref.: #19497]	Multicellular complex forming ability	yes
[Ref.: #19497]	Multicellular complex name	Aerial Mycelium
[Ref.: #19497]	Multicellular complex color	Blue grey (7031)
[Ref.: #19497]	Medium Name (multicellularity)	ISP 2

[Ref.: #19497]	Multicellular complex forming ability	yes
[Ref.: #19497]	Multicellular complex name	Aerial Mycelium
[Ref.: #19497]	Multicellular complex color	Blue grey (7031)
[Ref.: #19497]	Medium Name (multicellularity)	ISP 3

[Ref.: #19497]	Multicellular complex forming ability	yes
[Ref.: #19497]	Multicellular complex name	Aerial Mycelium
[Ref.: #19497]	Multicellular complex color	Blue grey (7031)
[Ref.: #19497]	Medium Name (multicellularity)	ISP 4

[Ref.: #19497]	Multicellular complex forming ability	yes
[Ref.: #19497]	Multicellular complex name	Aerial Mycelium
[Ref.: #19497]	Multicellular complex color	Blue grey (7031)
[Ref.: #19497]	Medium Name (multicellularity)	ISP 5

[Ref.: #19497]	Multicellular complex forming ability	yes
[Ref.: #19497]	Multicellular complex name	Aerial Mycelium
[Ref.: #19497]	Multicellular complex color	Blue grey (7031)
[Ref.: #19497]	Medium Name (multicellularity)	ISP 7

[Ref.: #19497]	Multicellular complex forming ability	no
[Ref.: #19497]	Medium Name (multicellularity)	ISP 6

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10292]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10292]

Culture medium growth

[Ref.: #10292]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10292]

Culture medium composition

expand / minimize

[Ref.: #19497]

Culture medium

ISP 2

[Ref.: #19497]

Culture medium growth

[Ref.: #19497]

Culture medium composition

expand / minimize

[Ref.: #19497]

Culture medium

ISP 3

[Ref.: #19497]

Culture medium growth

[Ref.: #19497]

Culture medium composition

expand / minimize

[Ref.: #19497]

Culture medium

ISP 4

[Ref.: #19497]

Culture medium growth

[Ref.: #19497]

Culture medium composition

expand / minimize

[Ref.: #19497]

Culture medium

ISP 5

[Ref.: #19497]

Culture medium growth

[Ref.: #19497]

Culture medium composition

expand / minimize

[Ref.: #19497]

Culture medium

ISP 6

[Ref.: #19497]

Culture medium growth

[Ref.: #19497]

Culture medium composition

expand / minimize

[Ref.: #19497]

Culture medium

ISP 7

[Ref.: #19497]

Culture medium growth

[Ref.: #19497]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #10292]	growth	28 °C
[Ref.: #19497]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.125

[Ref.: #19497]	Spore description	Formation of spore chains (retinaculiapetri)(hook), spore surface warty
[Ref.: #19497]	Type of spore	spore
[Ref.: #19497]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.71
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #10292]	Name of produced compound	lomofungin
[Ref.: #19497]	Name of produced compound	Phenazine antibiotic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19497]		NaCl		maximum	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19497]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19497]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19497]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19497]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19497]	mannitol ChEBI	+
[Ref.: #19497]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19497]	raffinose ChEBI	+
[Ref.: #19497]	rhamnose ChEBI	+
[Ref.: #19497]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19497]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	lomofungin	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19497]	355	+	+	-	-	+	-	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10292]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10292]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19497]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces lomondensis 16S rRNA gene, type strain LMG 20088	AJ781352	1467	GenBank ENA	68229 tax ID
[Ref.: #20218]	Streptomyces lomondensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4866	D44415	121	GenBank ENA	68229 tax ID	*
[Ref.: #20218]	Streptomyces lomondensis gene for 16S rRNA, partial sequence, strain: NBRC 15426	AB184673	1440	GenBank ENA	68229 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces lomondensis JCM 4866	GCA_014651035	scaffold	GenBank ENA	68229 tax ID	*
[Ref.: #66792]	Streptomyces lomondensis strain JCM 4866	68229.3	wgs	PATRIC	68229 tax ID	*
[Ref.: #66792]	Streptomyces lomondensis DSM 41428	GCA_021440105	contig	GenBank ENA	68229 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces lomondensis JCM 4866 NCBI: GCA_014651035.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces lomondensis JCM 4866 NCBI: GCA_014651035.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.224	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.062	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.125	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.71	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	no

Availability in culture collections External links

[Ref.: #10292]

Culture collection no.

DSM 41428, ATCC 25299, JCM 4866, KCC S-0866, NCIB 10094, NRRL 3252, BCRC 12208, CGMCC 4.1746, IFO 15426, NBRC 15426, NCIMB 10094

[Ref.: #85243]

SI-ID 265482

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces deserti sp. nov., isolated from hyper-arid Atacama Desert soil.	Santhanam R, Okoro CK, Rong X, Huang Y, Bull AT, Andrews BA, Asenjo JA, Weon HY, Goodfellow M	Antonie Van Leeuwenhoek	10.1007/s10482-011-9672-0	2011	*

References

#10292

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41428

#19497

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85243

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265482.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces lomondensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Streptomyces lomondensis JCM 4866

Streptomyces lomondensis JCM 4866

Change proposal

Change proposal