Name: Halorussus rarus JCM 16429
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161777

Type strain:

Species: Halorussus rarus

Culture col. no.: JCM 16429, CGMCC 1.10122

Strain history: H.-L. Cui TBN4.

NCBI tax ID(s): 660515 (species)

Section

Halorussus rarus JCM 16429 is a mesophilic, Gram-negative archaeon that was isolated from Taibei marine solar saltern in Jiangsu.

Gram-negative
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halobacteriaceae*
	Genus	*Halorussus*
	Species	**Halorussus rarus**
	Full Scientific Name (LPSN)	Halorussus rarus Cui et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.97

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.925
[Ref.: #69481]	Ability of spore formation	no Confidence in %98

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Taibei marine solar saltern in Jiangsu
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence GQ282618 (>99% sequence identity) for Halorussus rarus subclade from Microbeatlas

Aquatic Samples	10
Soil Samples	22
Animal Samples	3
Plant Samples
Total Samples	35

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halorussus rarus strain TBN4 16S ribosomal RNA gene, partial sequence	GQ282618	1471	ENA	660515 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halorussus rarus TBN4	GCA_003369835	contig	GenBank	660515 tax ID

[Ref.: #67770]

GC-content

66.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halorussus rarus TBN4 NCBI: GCA_003369835.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halorussus rarus TBN4 NCBI: GCA_003369835.1
[Ref.: #69480]	motile	no	71.532	no
[Ref.: #69480]	flagellated	no	97.234	no
[Ref.: #69480]	gram-positive	no	96.673	no
[Ref.: #69480]	anaerobic	no	94.866	no
[Ref.: #69480]	aerobic	yes	83.553	no
[Ref.: #69480]	halophile	yes	86.625	no
[Ref.: #69480]	spore-forming	no	93.626	no
[Ref.: #69480]	glucose-util	yes	85.431	no
[Ref.: #69480]	thermophile	no	83.54	yes
[Ref.: #69480]	glucose-ferment	no	86.094	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 16429, CGMCC 1.10122

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halorussus amylolyticus sp. nov., isolated from an inland salt lake.	Yuan PP, Ye WT, Pan JX, Han D, Zhang WJ, Cui HL	Int J Syst Evol Microbiol	10.1099/ijsem.0.000487	2015	*
Phylogeny	Halorussus ruber sp. nov., isolated from an inland salt lake of China.	Xu WD, Zhang WJ, Han D, Cui HL, Yang K	Arch Microbiol	10.1007/s00203-014-1058-z	2014	*
Phylogeny	Halorussus rarus gen. nov., sp. nov., a new member of the family Halobacteriaceae isolated from a marine solar saltern.	Cui HL, Gao X, Yang X, Xu XW	Extremophiles	10.1007/s00792-010-0329-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Halorussus rarus TBN4

Halorussus rarus TBN4

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