Name: Haloplanus aerogenes JCM 16430
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161778

Type strain:

Species: Haloplanus aerogenes

Culture col. no.: JCM 16430, CGMCC 1.10124

Strain history: H.-L. Cui TBN37.

NCBI tax ID(s): 660522 (species)

Section

Haloplanus aerogenes JCM 16430 is a mesophilic, Gram-negative archaeon that was isolated from Taibei marine solar saltern near Lianyungang.

Gram-negative
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Haloferacaceae*
	Genus	*Haloplanus*
	Species	**Haloplanus aerogenes**
	Full Scientific Name (LPSN)	Haloplanus aerogenes Cui et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.983

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.984
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Taibei marine solar saltern near Lianyungang
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jiangsu
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence GQ282625 (>99% sequence identity) for Haloplanus aerogenes subclade from Microbeatlas

Aquatic Samples	12
Soil Samples	13
Animal Samples	91
Plant Samples
Total Samples	116

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Haloplanus aerogenes strain TBN37 16S ribosomal RNA gene, partial sequence	GQ282625	1471	ENA	660522 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Haloplanus aerogenes JCM 16430	GCA_003856835	complete	GenBank	660522 tax ID	*
[Ref.: #66792]	Haloplanus aerogenes CGMCC 1.10124	GCA_003688715	scaffold	GenBank	660522 tax ID	*
[Ref.: #66792]	Haloplanus aerogenes JCM 16430	2914730251	complete	JGI IMG/M	660522 tax ID	*
[Ref.: #66792]	Haloplanus aerogenes CGMCC 1.10124	2619618938	draft	JGI IMG/M	660522 tax ID	*
[Ref.: #66792]	Haloplanus aerogenes strain CGMCC 1.10124	660522.3	wgs	PATRIC	660522 tax ID	*
[Ref.: #66792]	Haloplanus aerogenes strain JCM 16430	660522.4	complete	PATRIC	660522 tax ID	*

[Ref.: #67770]

GC-content

64.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Haloplanus aerogenes JCM 16430 NCBI: GCA_003856835.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Haloplanus aerogenes JCM 16430 NCBI: GCA_003856835.1
[Ref.: #69480]	motile	no	60.689	no
[Ref.: #69480]	flagellated	no	96.101	no
[Ref.: #69480]	gram-positive	no	97.551	no
[Ref.: #69480]	anaerobic	no	96.301	no
[Ref.: #69480]	aerobic	yes	86.208	no
[Ref.: #69480]	halophile	yes	89.229	no
[Ref.: #69480]	spore-forming	no	94.639	no
[Ref.: #69480]	thermophile	no	86.095	yes
[Ref.: #69480]	glucose-util	yes	83.127	no
[Ref.: #69480]	glucose-ferment	no	87.975	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 16430, CGMCC 1.10124

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloplanus aerogenes sp. nov., an extremely halophilic archaeon from a marine solar saltern.	Cui HL, Gao X, Yang X, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.025023-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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