Name: Halogranum amylolyticum JCM 16428
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161776

Type strain:

Species: Halogranum amylolyticum

Culture col. no.: JCM 16428, CGMCC 1.10121

Strain history: H.-L. Cui TNN58.

NCBI tax ID(s): 660520 (species)

Section

Halogranum amylolyticum JCM 16428 is a mesophilic, Gram-negative archaeon that was isolated from Tainan marine solar saltern near Lianyungang City.

Gram-negative
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Haloferacaceae*
	Genus	*Halogranum*
	Species	**Halogranum amylolyticum**
	Full Scientific Name (LPSN)	Halogranum amylolyticum Cui et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.952

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99
[Ref.: #69481]	Ability of spore formation	no Confidence in %99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Tainan marine solar saltern near Lianyungang City
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jiangsu
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence GQ282623 (>99% sequence identity) for Halogranum amylolyticum subclade from Microbeatlas

Aquatic Samples	30
Soil Samples	21
Animal Samples
Plant Samples
Total Samples	51

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halogranum amylolyticum strain TNN58 16S ribosomal RNA gene, partial sequence	GQ282623	1472	ENA	660520 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halogranum amylolyticum CGMCC 1.10121	GCA_900110465	scaffold	GenBank	660520 tax ID
[Ref.: #66792]	Halogranum amylolyticum CGMCC 1.10121	2617270928	draft	JGI IMG/M	660520 tax ID	*
[Ref.: #66792]	Halogranum amylolyticum strain CGMCC 1.10121	660520.5	wgs	PATRIC	660520 tax ID	*

[Ref.: #67770]

GC-content

62 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halogranum amylolyticum CGMCC 1.10121 NCBI: GCA_900110465.1
[Ref.: #69481]	spore-forming	no	99	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 16428, CGMCC 1.10121

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halogranum gelatinilyticum sp. nov. and Halogranum amylolyticum sp. nov., isolated from a marine solar saltern, and emended description of the genus Halogranum.	Cui HL, Yang X, Gao X, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.024976-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Halogranum amylolyticum CGMCC 1.10121

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