Name: Streptomyces crystallinus DSM 40945
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16176

Type strain:

Species: Streptomyces crystallinus

Culture col. no.: DSM 40945, JCM 5067, KCC S-1067, NRRL (= Lederle T-1384), NRRL B-3629, CGMCC 4.1600, IFO 15401, KCTC 9717, NBRC 15401, NCIMB 12860

Strain history: KCC S-1067 <-- MS 1483 <-- NRRL B-3629 <-- Lederle Labs.; T-1384.

NCBI tax ID(s): 68191 (species)

SI-ID 49843

DSM 40945, JCM 5067, NRRL B-3629, IFO 15401, NCIMB 12860, KCTC 9717, AS 4.16, NBRC 15401, CGMCC 4.1600

Special Collections

Section

Streptomyces crystallinus DSM 40945 is a bacterium that produces antibiotic compounds.

antibiotic compound production
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces crystallinus**
	Full Scientific Name (LPSN)	Streptomyces crystallinus Tresner et al. 1961 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9908]	growth	28 °C
[Ref.: #19495]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9908]

Name of produced compound

hygromycin A

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19495]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19495]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19495]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19495]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19495]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19495]	mannitol ChEBI	-
[Ref.: #19495]	myo-inositol ChEBI	+/-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19495]	raffinose ChEBI	-
[Ref.: #19495]	rhamnose ChEBI	-
[Ref.: #19495]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19495]	xylose ChEBI	+/-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	hygromycin A ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19495]	353	+	+	-	-	-	+	-	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9908]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19495]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces crystallinus strain JCM 5067 16S ribosomal RNA gene, partial sequence	AY999762	1435	GenBank ENA	68191 tax ID	*
[Ref.: #20218]	Streptomyces crystallinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 5067	D44436	120	GenBank ENA	68191 tax ID	*
[Ref.: #20218]	Streptomyces crystallinus gene for 16S rRNA, partial sequence, strain: NBRC 15401	AB184652	1457	GenBank ENA	68191 tax ID	*

Availability in culture collections External links

[Ref.: #9908]

Culture collection no.

DSM 40945, JCM 5067, KCC S-1067, NRRL (= Lederle T-1384), NRRL B-3629, CGMCC 4.1600, IFO 15401, KCTC 9717, NBRC 15401, NCIMB 12860

[Ref.: #85241]

SI-ID 49843

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces sanyensis sp. nov., isolated from mangrove sediment.	Sui JL, Xu XX, Qu Z, Wang HL, Lin HP, Xie QY, Ruan JS, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.023515-0	2010	*

References

#9908

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40945

#19495

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#85241

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49843.1 )

* These data were automatically processed and therefore are not curated

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