Strain identifier

BacDive ID: 16176

Type strain: Yes

Species: Streptomyces crystallinus

Strain history: KCC S-1067 <-- MS 1483 <-- NRRL B-3629 <-- Lederle Labs.; T-1384.

NCBI tax ID(s): 68191 (species)

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General

@ref: 9908

BacDive-ID: 16176

DSM-Number: 40945

keywords: 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Streptomyces crystallinus DSM 40945 is a mesophilic bacterium that produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 68191
  • Matching level: species

strain history

@refhistory
9908<- NRRL (= Lederle T-1384)
67770KCC S-1067 <-- MS 1483 <-- NRRL B-3629 <-- Lederle Labs.; T-1384.

doi: 10.13145/bacdive16176.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces crystallinus
  • full scientific name: Streptomyces crystallinus Tresner et al. 1961 (Approved Lists 1980)

@ref: 9908

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces crystallinus

full scientific name: Streptomyces crystallinus Tresner et al. 1961

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9908GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9908ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
9908positivegrowth28mesophilic
19495positiveoptimum28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

  • @ref: 9908
  • compound: hygromycin A

halophily

  • @ref: 19495
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1949562968cellulose-
1949516634raffinose-
1949526546rhamnose-
1949528757fructose-
1949529864mannitol-
1949517268myo-inositol+/-
1949518222xylose+/-
1949517992sucrose-
1949522599arabinose+
1949517234glucose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6777069414hygromycin Ayes
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase+4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
19495++---+-+--+

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
99081Risk group (German classification)
194951Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces crystallinus strain JCM 5067 16S ribosomal RNA gene, partial sequenceAY9997621435ena68191
20218Streptomyces crystallinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 5067D44436120ena68191
20218Streptomyces crystallinus gene for 16S rRNA, partial sequence, strain: NBRC 15401AB1846521457ena68191

External links

@ref: 9908

culture collection no.: DSM 40945, JCM 5067, KCC S-1067, NRRL (= Lederle T-1384), NRRL B-3629, CGMCC 4.1600, IFO 15401, KCTC 9717, NBRC 15401, NCIMB 12860

straininfo link

  • @ref: 85241
  • straininfo: 49843

literature

  • topic: Phylogeny
  • Pubmed-ID: 20693357
  • title: Streptomyces sanyensis sp. nov., isolated from mangrove sediment.
  • authors: Sui JL, Xu XX, Qu Z, Wang HL, Lin HP, Xie QY, Ruan JS, Hong K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.023515-0
  • year: 2010
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9908Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40945)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40945
19495Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40954.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
85241Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49843.1StrainInfo: A central database for resolving microbial strain identifiers