Name: Parashewanella spongiae JCM 13830
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161403

Type strain:

Species: Parashewanella spongiae

Culture col. no.: JCM 13830, KCCM 42304, KCTC 22492

Strain history: K. K. Kwon HJ039.

NCBI tax ID(s): 342950 (species)

Special Collections

JCM
KCTC

Section

Parashewanella spongiae JCM 13830 is a motile bacterium that was isolated from Marine sponge.

motile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Parashewanella*
	Species	**Parashewanella spongiae**
	Full Scientific Name (LPSN)	Parashewanella spongiae (Yang et al. 2006) Xu et al. 2019

Synonym

Shewanella spongiae

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	15 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %92.335

[Ref.: #67770]

Observation

quinones: Q-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Marine sponge
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Parashewanella spongiae strain HJ039 16S ribosomal RNA gene, partial sequence	DQ167234	1474	GenBank ENA	342950 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Parashewanella spongiae KCTC 22492	GCA_003676335	scaffold	GenBank ENA	342950 tax ID
[Ref.: #66792]	Parashewanella spongiae strain HJ039	342950.5	complete	PATRIC	342950 tax ID	*
[Ref.: #66792]	Shewanella spongiae strain KCTC 22492	342950.4	wgs	PATRIC	342950 tax ID	*
[Ref.: #66792]	Parashewanella spongiae KCTC 22492	2831983634	draft	JGI IMG/M	342950 tax ID	*
[Ref.: #66792]	Parashewanella spongiae KCTC 22492	GCA_023283745	contig	GenBank ENA	342950 tax ID	*

[Ref.: #67770]	GC-content	52.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	39.3 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Parashewanella spongiae strain HJ039 PATRIC: 342950.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.829	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.335	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	54.365	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	79.385	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 13830, KCCM 42304, KCTC 22492

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella spongiae sp. nov., isolated from a marine sponge.	Yang SH, Kwon KK, Lee HS, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64540-0	2006	*
Phylogeny	Parashewanella hymeniacidonis sp. nov., isolated from marine sponge (Hymeniacidon sinapium).	Kim SB, Park JS	Int J Syst Evol Microbiol	10.1099/ijsem.0.005226	2022	*
Phylogeny	Proposal of Parashewanella gen. nov. to accommodate Parashewanella curva sp. nov. and Parashewanella spongiae comb. nov. in the Shewanellaceae.	Xu S, Yu K, Su H, Chen B, Huang W, Liang J, Wang Y, Wang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.003298	2019	*
	Whole-Genome Comparisons Among the Genus Shewanella Reveal the Enrichment of Genes Encoding Ankyrin-Repeats Containing Proteins in Sponge-Associated Bacteria.	Alex A, Antunes A	Front Microbiol	10.3389/fmicb.2019.00005	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Parashewanella spongiae strain HJ039

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