Strain identifier
BacDive ID: 161403
Type strain: 
Species: Parashewanella spongiae
Strain history: K. K. Kwon HJ039.
NCBI tax ID(s): 342950 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 161403
keywords: genome sequence, 16S sequence, Bacteria, motile
description: Parashewanella spongiae JCM 13830 is a motile bacterium that was isolated from Marine sponge.
NCBI tax id
- NCBI tax id: 342950
- Matching level: species
strain history
- @ref: 67770
- history: K. K. Kwon HJ039.
doi: 10.13145/bacdive161403.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Parashewanella
- species: Parashewanella spongiae
- full scientific name: Parashewanella spongiae (Yang et al. 2006) Xu et al. 2019
synonyms
- @ref: 20215
- synonym: Shewanella spongiae
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Parashewanella
species: Parashewanella spongiae
full scientific name: Parashewanella spongiae (Yang et al. 2006) Xu et al. 2019
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 15
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 92.335
observation
- @ref: 67770
- observation: quinones: Q-8
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Marine sponge
Sequence information
16S sequences
- @ref: 67770
- description: Parashewanella spongiae strain HJ039 16S ribosomal RNA gene, partial sequence
- accession: DQ167234
- length: 1474
- database: nuccore
- NCBI tax ID: 342950
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Parashewanella spongiae strain HJ039 | 342950.5 | complete | patric | 342950 |
| 66792 | Shewanella spongiae strain KCTC 22492 | 342950.4 | wgs | patric | 342950 |
| 66792 | Parashewanella spongiae KCTC 22492 | 2831983634 | draft | img | 342950 |
| 67770 | Parashewanella spongiae KCTC 22492 | GCA_003676335 | scaffold | ncbi | 342950 |
| 66792 | Parashewanella spongiae KCTC 22492 | GCA_023283745 | contig | ncbi | 342950 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 67770 | 52.8 | high performance liquid chromatography (HPLC) |
| 67770 | 39.3 | genome sequence analysis |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 92.829 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 92.335 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 54.365 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 79.385 | no |
External links
@ref: 67770
culture collection no.: JCM 13830, KCCM 42304, KCTC 22492
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 17158991 | Shewanella spongiae sp. nov., isolated from a marine sponge. | Yang SH, Kwon KK, Lee HS, Kim SJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.64540-0 | 2006 | Animals, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Korea, Marine Biology, Molecular Sequence Data, Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Shewanella/*classification/genetics/isolation & purification/physiology | Genetics |
| Phylogeny | 30785388 | Proposal of Parashewanella gen. nov. to accommodate Parashewanella curva sp. nov. and Parashewanella spongiae comb. nov. in the Shewanellaceae. | Xu S, Yu K, Su H, Chen B, Huang W, Liang J, Wang Y, Wang G | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003298 | 2019 | Animals, Anthozoa/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification, Genes, Bacterial, Islands, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
| 30787909 | Whole-Genome Comparisons Among the Genus Shewanella Reveal the Enrichment of Genes Encoding Ankyrin-Repeats Containing Proteins in Sponge-Associated Bacteria. | Alex A, Antunes A | Front Microbiol | 10.3389/fmicb.2019.00005 | 2019 | |||
| Phylogeny | 35230237 | Parashewanella hymeniacidonis sp. nov., isolated from marine sponge (Hymeniacidon sinapium). | Kim SB, Park JS | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005226 | 2022 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Fatty Acids/chemistry, Phospholipids/chemistry, Phylogeny, *Porifera/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |