Name: Caldococcus noboribetus JCM 13516
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161371

Type strain:

Species: Caldococcus noboribetus

Culture col. no.: JCM 13516

Strain history: T. Itoh <-- T. Oshima and A. Yamagishi NC12.

NCBI tax ID(s): 57174 (species)

Special Collections

Section

Caldococcus noboribetus JCM 13516 is an archaeon that was isolated from Noboribetsu hot spring.

16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Desulfurococcales*
	Family	[Desulfurococcales, not assigned to family]
	Genus	"Caldococcus"
	Species	"Caldococcus noboribetus"
	Full Scientific Name (LPSN)	Caldococcus noboribetus Aoshima et al. 1996

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	85 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Noboribetsu hot spring
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hokkaido
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence D85038 (>99% sequence identity) for Acidilobus saccharovorans subclade from Microbeatlas

Aquatic Samples	35
Soil Samples
Animal Samples
Plant Samples
Total Samples	35

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Caldococcus noboribetus DNA for 16S rRNA, complete sequence	D85038	1565	GenBank ENA	57174 tax ID

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 13516

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Caldococcus noboribetus in external resources:
SILVA
BRENDA
PANGAEA
GBIF