Bacteroides uniformis (JCM 13288)

Name: Bacteroides uniformis (JCM 13288)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161339

Type strain

Culture col. no. JCM 13288

NCBI tax ID(s) 820

Special Collections JCM

Links

Bacteroides uniformis JCM 13288 is a mesophilic prokaryote that was isolated from Human feces.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 231859

JCM 13288

@ref 20215

Last LPSN update 2025-12-16 10:08:43

Domain Pseudomonadati

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Bacteroidaceae

Genus Bacteroides

Species Bacteroides uniformis

Full scientific name Bacteroides uniformis Eggerth and Gagnon 1933 (Approved Lists 1980)

BacDive ID	Other strains from **Bacteroides uniformis** (14)	Type strain
1604	B. uniformis CCUG 4942, JCM 5828, CIP 103695, KCTC 5204, ... (type strain)
1605	B. uniformis mprl 1841, DSM 9672
147140	B. uniformis CCUG 32930
148471	B. uniformis CCUG 35501
150459	B. uniformis CCUG 39989
153424	B. uniformis CCUG 49527
156940	B. uniformis CCUG 67191
159170	B. uniformis H1_6, DSM 108145
159171	B. uniformis H4_4, DSM 108146
159172	B. uniformis H4_7, DSM 108147
159173	B. uniformis H5_2, DSM 108148
161337	B. uniformis JCM 13286
161338	B. uniformis JCM 13287
169338	B. uniformis CLA-AV-11, DSM 110080

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.5
125438	negative	93.207

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate anaerobe	95.8

Spore formation

@ref	Spore formation	Confidence
125439		98.7
125438		91.01

Isolation, sampling and environmental information

Isolation

67770

Sample typeHuman feces

Taxonmaps

69479

Global distribution of 16S sequence AB215084 (>99% sequence identity) for Bacteroides uniformis from Microbeatlas

Aquatic Samples	15505
Soil Samples	4816
Animal Samples	363541
Plant Samples	1489
Total Samples	385351

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1883152v1 assembly for Bacteroides uniformis JCM13288	complete	GCA_018831525	820.5511	820	60.2

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Bacteroides uniformis gene for 16S rRNA, partial sequence, isolate:mat-344	AB215084	1488		820

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacteroides uniformis JCM13288
NCBI: GCA_018831525

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	no	58.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	95.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacteroides uniformis JCM13288
NCBI: GCA_018831525.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	93.21	no
125438	anaerobic	anaerobicⓘ	yes	86.03	no
125438	aerobic	aerobicⓘ	no	93.46	no
125438	spore-forming	spore-formingⓘ	no	91.01	no
125438	thermophilic	thermophileⓘ	no	94.97	yes
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Fungal beta-glucan-facilitated cross-feeding activities between Bacteroides and Bifidobacterium species.	Fernandez-Julia P, Black GW, Cheung W, Van Sinderen D, Munoz-Munoz J.	Commun Biol	10.1038/s42003-023-04970-4	2023
Metabolism	Utilization of dietary mixed-linkage beta-glucans by the Firmicute Blautia producta.	Singh RP, Niharika J, Thakur R, Wagstaff BA, Kumar G, Kurata R, Patel D, Levy CW, Miyazaki T, Field RA.	J Biol Chem	10.1016/j.jbc.2023.104806	2023
Metabolism	Linear and branched beta-Glucans degrading enzymes from versatile Bacteroides uniformis JCM 13288(T) and their roles in cooperation with gut bacteria.	Singh RP, Rajarammohan S, Thakur R, Hassan M	Gut Microbes	10.1080/19490976.2020.1826761	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacteroides uniformis (JCM 13288)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_018831525

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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