Strain identifier
BacDive ID: 161339
Type strain: 
Species: Bacteroides uniformis
Strain history: M. Kitahara 344 <-- M. Matsumoto 344.
NCBI tax ID(s): 820 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 161339
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative
description: Bacteroides uniformis JCM 13288 is an anaerobe, Gram-negative bacterium that was isolated from Human feces.
NCBI tax id
- NCBI tax id: 820
- Matching level: species
strain history
- @ref: 67770
- history: M. Kitahara 344 <-- M. Matsumoto 344.
doi: 10.13145/bacdive161339.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Bacteroidaceae
- genus: Bacteroides
- species: Bacteroides uniformis
- full scientific name: Bacteroides uniformis Eggerth and Gagnon 1933 (Approved Lists 1980)
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Bacteroidaceae
genus: Bacteroides
species: Bacteroides uniformis
full scientific name: Bacteroides uniformis Eggerth and Gagnon 1933
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 93.207
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 91.01
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Human feces
taxonmaps
- @ref: 69479
- File name: preview.99_114.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_21;96_89;97_94;98_103;99_114&stattab=map
- Last taxonomy: Bacteroides uniformis
- 16S sequence: AB215084
- Sequence Identity:
- Total samples: 385351
- soil counts: 4816
- aquatic counts: 15505
- animal counts: 363541
- plant counts: 1489
Sequence information
16S sequences
- @ref: 67770
- description: Bacteroides uniformis gene for 16S rRNA, partial sequence, isolate:mat-344
- accession: AB215084
- length: 1488
- database: nuccore
- NCBI tax ID: 820
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacteroides uniformis JCM13288 | GCA_018831525 | complete | ncbi | 820 |
| 66792 | Bacteroides uniformis strain JCM13288 | 820.5511 | complete | patric | 820 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 93.207 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 86.029 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 93.459 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.01 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.97 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 89.5 | no |
External links
@ref: 67770
culture collection no.: JCM 13288
straininfo link
- @ref: 113365
- straininfo: 231859
literature
- topic: Metabolism
- Pubmed-ID: 33043794
- title: Linear and branched beta-Glucans degrading enzymes from versatile Bacteroides uniformis JCM 13288(T) and their roles in cooperation with gut bacteria.
- authors: Singh RP, Rajarammohan S, Thakur R, Hassan M
- journal: Gut Microbes
- DOI: 10.1080/19490976.2020.1826761
- year: 2020
- mesh: Bacteroides/enzymology/growth & development/*metabolism, Carbohydrate Conformation, *Gastrointestinal Microbiome, Genetic Loci, Genome, Bacterial, Glycoside Hydrolases/genetics/*metabolism, Gram-Positive Bacteria/genetics/growth & development/*metabolism, Microbial Interactions, Oligosaccharides/metabolism, Polysaccharides/metabolism, beta-Glucans/chemistry/*metabolism
- topic2: Enzymology
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 113365 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID231859.1 |