Name: Streptomyces albogriseolus DSM 40249
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16125

Type strain:

Species: Streptomyces albogriseolus

Culture col. no.: DSM 40249, ATCC 25518, CBS 660.69, IFO 13106, ISP 5249, NBRC 13106, RIA 1298, IPV 334a, JCM 4536, BCRC 12458, CGMCC 4.1780, KCTC 19977, NRRL B-5622, VKM Ac-1749, VTT E-011973

Strain history: KCC S-0536 <-- IFO 13106 <-- SAJ <-- ISP 5249 <-- IPV 334a.

NCBI tax ID(s): 67382 (species)

Other strains from Streptomyces albogriseolus

S. albogriseolus 7-A, DSM 40003, ATCC 23875, CBS ... (type strain)
S. albogriseolus BU 1,9 III, No. 1,9 III, DSM 46449, ...
S. albogriseolus ST033423(HKI),
S. albogriseolus S-3253, CIP 104363

Section

Streptomyces albogriseolus DSM 40249 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces albogriseolus**
	Full Scientific Name (LPSN)	Streptomyces albogriseolus Benedict et al. 1954 (Approved Lists 1980)

	Synonym	"Actinomyces* viridodiastaticus"*
	Synonym	Streptomyces viridodiastaticus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.204

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9404]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9404]

Culture medium growth

[Ref.: #9404]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9404]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9404]	growth	28 °C
[Ref.: #18569]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9404]	Temperature range	mesophilic
[Ref.: #18569]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18569]		NaCl		maximum	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18569]	arabinose ChEBI	+/-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18569]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18569]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18569]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18569]	mannitol ChEBI	+
[Ref.: #18569]	myo-inositol ChEBI	+/-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18569]	raffinose ChEBI	-
[Ref.: #18569]	rhamnose ChEBI	+
[Ref.: #18569]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18569]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18569]	128	+	+	-	+	-	-	+	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9404]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18569]	Biosafety level	1	German classification
[Ref.: #9404]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces viridodiastaticus strain IFO 13106 16S ribosomal RNA gene, partial sequence	AY999852	1421	ENA	67382 tax ID	*
[Ref.: #20218]	Streptomyces viridodiastaticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4536	D44221	121	ENA	67382 tax ID	*
[Ref.: #20218]	Streptomyces viridodiastaticus gene for 16S rRNA, partial sequence, strain: NBRC 13106	AB184317	1475	ENA	67382 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces viridodiastaticus JCM 4536	GCA_014655475	scaffold	GenBank	67382 tax ID
[Ref.: #66792]	Streptomyces viridodiastaticus strain JCM 4536	67382.3	wgs	PATRIC	67382 tax ID	*

[Ref.: #67770]

GC-content

72.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces viridodiastaticus JCM 4536 NCBI: GCA_014655475.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces viridodiastaticus strain JCM 4536 PATRIC: 67382.3
[Ref.: #69480]	gram-positive	yes	90.648	no
[Ref.: #69480]	anaerobic	no	99.084	no
[Ref.: #69480]	halophile	no	89.253	no
[Ref.: #69480]	spore-forming	yes	96.612	no
[Ref.: #69480]	glucose-util	yes	88.826	yes
[Ref.: #69480]	thermophile	no	98.252	yes
[Ref.: #69480]	flagellated	no	97.916	no
[Ref.: #69480]	motile	no	93.841	no
[Ref.: #69480]	aerobic	yes	92.295	no
[Ref.: #69480]	glucose-ferment	no	88.273	no

Availability in culture collections External links

[Ref.: #9404]

Culture collection no.

DSM 40249, ATCC 25518, CBS 660.69, IFO 13106, ISP 5249, NBRC 13106, RIA 1298, IPV 334a, JCM 4536, BCRC 12458, CGMCC 4.1780, KCTC 19977, NRRL B-5622, VKM Ac-1749, VTT E-011973

References

#9404

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40249

#18569

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Streptomyces viridodiastaticus JCM 4536

Streptomyces viridodiastaticus strain JCM 4536

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