Strain identifier

BacDive ID: 16125

Type strain: Yes

Species: Streptomyces albogriseolus

Strain history: KCC S-0536 <-- IFO 13106 <-- SAJ <-- ISP 5249 <-- IPV 334a.

NCBI tax ID(s): 67382 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 9404

BacDive-ID: 16125

DSM-Number: 40249

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces albogriseolus DSM 40249 is a spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 67382
  • Matching level: species

strain history

@refhistory
9404<- E.B. Shirling, ISP <- E. Baldacci, IPV 334a
67770KCC S-0536 <-- IFO 13106 <-- SAJ <-- ISP 5249 <-- IPV 334a.

doi: 10.13145/bacdive16125.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces albogriseolus
  • full scientific name: Streptomyces albogriseolus Benedict et al. 1954 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Actinomyces viridodiastaticus
    20215Streptomyces viridodiastaticus

@ref: 9404

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces viridodiastaticus

full scientific name: Streptomyces viridodiastaticus (Baldacci et al. 1955) Pridham et al. 1958

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no91.204
69480100positive

Culture and growth conditions

culture medium

  • @ref: 9404
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9404positivegrowth28mesophilic
18569positiveoptimum28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

halophily

  • @ref: 18569
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1856917234glucose+
1856922599arabinose+/-
1856917992sucrose-
1856918222xylose-
1856917268myo-inositol+/-
1856929864mannitol+
1856928757fructose+
1856926546rhamnose+
1856916634raffinose-
1856962968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate-assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase+4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18569++-+--++--+

Isolation, sampling and environmental information

isolation

  • @ref: 9404
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
94041Risk group (German classification)
185691German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces viridodiastaticus strain IFO 13106 16S ribosomal RNA gene, partial sequenceAY9998521421ena67382
20218Streptomyces viridodiastaticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4536D44221121ena67382
20218Streptomyces viridodiastaticus gene for 16S rRNA, partial sequence, strain: NBRC 13106AB1843171475ena67382

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces viridodiastaticus strain JCM 453667382.3wgspatric67382
67770Streptomyces viridodiastaticus JCM 4536GCA_014655475scaffoldncbi67382

GC content

  • @ref: 67770
  • GC-content: 72.5
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes90.648no
anaerobicno99.084no
halophileno89.253no
spore-formingyes96.612no
glucose-utilyes88.826yes
thermophileno98.252yes
flagellatedno97.916no
motileno93.841no
aerobicyes92.295no
glucose-fermentno88.273no

External links

@ref: 9404

culture collection no.: DSM 40249, ATCC 25518, CBS 660.69, IFO 13106, ISP 5249, NBRC 13106, RIA 1298, IPV 334a, JCM 4536, BCRC 12458, CGMCC 4.1780, KCTC 19977, NRRL B-5622, VKM Ac-1749, VTT E-011973

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9404Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40249)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40249
18569Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40249.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1