Gracilibacillus sp. (DSM 24807, KCTC 13794, NCCP 170)

Name: Gracilibacillus sp. (DSM 24807, KCTC 13794, NCCP 170)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160610

Type strain

Culture col. no. DSM 24807 KCTC 13794 NCCP 170 JCM 18860

NCBI tax ID(s) 1306159

Special Collections DSMZ JCM KCTC

History DSMZ <- Ahmed Iftikhar, National Agricultural Research Centre, Pakistan; NCCP-170 <- A. Iftikhar and R. Aneela JCM <-- I. Ahmed NCCP-170.

Links

DSM 24807 is a bacterium that was isolated from salt mines.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 408054

DSM 24807

@ref 20215

Last LPSN update 2026-05-29 08:44:29

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Gracilibacillus

Full scientific name Gracilibacillus Wainø et al. 1999

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67518	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
67518	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	93.538

Spore formation

@ref	Spore formation	Confidence
125438		92.61

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67518	salt mines	Kark, Kohat	Pakistan	PAK	Asia
67770	Bahadur Khel Salt mines	Karak region, Kohat, KPK Province	Pakistan	PAK	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM131530v1 assembly for Gracilibacillus sp. JCM 18860	contig	GCA_001315305	1306159.3	2734481981	1306159	45.59

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Gracilibacillus sp. NCCP-170 gene for 16S rRNA, partial sequence.	AB698801	1453		1150327

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM131530v1 assembly for Gracilibacillus sp. JCM 18860
BV-BRC: 1306159.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.54	no
125439	motility	BacteriaNetⓘ	yes	73.73	no
125439	gram_stain	BacteriaNetⓘ	variable	62.07	no
125439	spore_formation	BacteriaNetⓘ	yes	87.61	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Gracilibacillus sp. JCM 18860
PATRIC: 1306159.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	81.92	no
125438	anaerobic	anaerobicⓘ	no	95.12	no
125438	spore-forming	spore-formingⓘ	yes	92.61	no
125438	aerobic	aerobicⓘ	yes	72.62	no
125438	thermophilic	thermophileⓘ	no	94.52	yes
125438	flagellated	motile2+ⓘ	yes	82.25	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67518	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24807
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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