Strain identifier
BacDive ID: 160610
Type strain: 
Species: Gracilibacillus sp.
Strain history: I. Ahmed NCCP-170.
NCBI tax ID(s): 1306159 (species)
version 9.1 (current version)
General
@ref: 67518
BacDive-ID: 160610
DSM-Number: 24807
keywords: genome sequence, Bacteria, spore-forming, motile
description: Gracilibacillus sp. DSM 24807 is a spore-forming, motile bacterium that was isolated from salt mines.
NCBI tax id
- NCBI tax id: 1306159
- Matching level: species
strain history
| @ref | history |
|---|---|
| 67518 | <- Ahmed Iftikhar, National Agricultural Research Centre, Pakistan; NCCP-170 <- A. Iftikhar and R. Aneela |
| 67770 | I. Ahmed NCCP-170. |
doi: 10.13145/bacdive160610.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Gracilibacillus
- species: Gracilibacillus sp.
- full scientific name: Gracilibacillus Wainø et al. 1999
@ref: 67518
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Gracilibacillus
species: Gracilibacillus sp.
full scientific name: Gracilibacillus sp.
type strain: no
Culture and growth conditions
culture medium
- @ref: 67518
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 67518 | positive | growth | 30 |
| 67770 | positive | growth | 30 |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | yes | 92.61 |
| 69481 | yes | 100 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 67518 | salt mines | Kark, Kohat | Pakistan | PAK | Asia |
| 67770 | Bahadur Khel Salt mines | Karak region, Kohat, KPK Province | Pakistan | PAK | Asia |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Gracilibacillus sp. JCM 18860 | 1306159.3 | wgs | patric | 1306159 |
| 66792 | Gracilibacillus sp. JCM 18860 | 2734481981 | draft | img | 1306159 |
| 67770 | Gracilibacillus sp. JCM 18860 | GCA_001315305 | contig | ncbi | 1306159 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 81.922 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.116 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 92.61 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 72.623 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.52 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 82.251 | no |
External links
@ref: 67518
culture collection no.: DSM 24807, KCTC 13794, NCCP 170, JCM 18860
straininfo link
- @ref: 112848
- straininfo: 408054
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67518 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24807 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24807) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 112848 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408054.1 |