Name: Streptomyces umbrinus DSM 40278
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16061

Type strain:

Species: Streptomyces umbrinus

Culture col. no.: DSM 40278, ATCC 19929, ATCC 25503, CBS 645.69, IFO 13091, INA 1703, ISP 5278, NBRC 13091, RIA 1283, JCM 4521, BCRC 15129, CGMCC 4.1791, INA 1703/53, NRRL B-2572, VKM Ac-1747

Strain history: KCC S-0521 <-- IFO 13091 <-- SAJ <-- ISP 5278 <-- INA 1703/53.

NCBI tax ID(s): 67370 (species)

Other strains from Streptomyces umbrinus

S. umbrinus DSM 41174, IMRU 3842
S. umbrinus ST005095(HKI), IMET 40277

Section

Streptomyces umbrinus DSM 40278 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	Streptomycetales
	Family	Streptomycetaceae
	Genus	*Streptomyces*
	Species	**Streptomyces umbrinus**
	Full Scientific Name (PNU)	Streptomyces umbrinus (Sveshnikova 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonym

"Actinomyces umbrinus"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9429]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9429]

Culture medium growth

[Ref.: #9429]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #9429]

Culture medium composition

expand / minimize

[Ref.: #9429]

Culture medium

ISP 5 MEDIUM (DSMZ Medium 993)

[Ref.: #9429]

Culture medium growth

[Ref.: #9429]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9429]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9429]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9429]	Sample type/isolated from	soil
[Ref.: #9429]	Country	USSR
[Ref.: #9429]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9429]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces umbrinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4521	D44209	120	ENA	67370 tax ID	*
[Ref.: #20218]	Streptomyces umbrinus gene for 16S rRNA, partial sequence, strain: NBRC 13091	AB184305	1479	ENA	67370 tax ID	*
[Ref.: #20218]	Streptomyces umbrinus strain NRRL B-2572T 16S ribosomal RNA gene, partial sequence	DQ442549	1538	ENA	67370 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces umbrinus strain JCM 4521	67370.3	wgs	PATRIC	67370 tax ID	*
[Ref.: #67770]	Streptomyces umbrinus JCM 4521	GCA_014650195	scaffold	GenBank	67370 tax ID

Availability in culture collections External links

[Ref.: #9429]

Culture collection no.

DSM 40278, ATCC 19929, ATCC 25503, CBS 645.69, IFO 13091, INA 1703, ISP 5278, NBRC 13091, RIA 1283, JCM 4521, BCRC 15129, CGMCC 4.1791, INA 1703/53, NRRL B-2572, VKM Ac-1747

[Ref.: #20218]

Associated Passport(s) in StrainInfo

165184, 100791, 100793, 229170, 100796, 165186, 100797, 334574, 100800

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Two new species of the genus Streptomyces: Streptomyces camponoti sp. nov. and Streptomyces cuticulae sp. nov. isolated from the cuticle of Camponotus japonicus Mayr.	Piao C, Zheng W, Li Y, Liu C, Jin L, Song W, Yan K, Wang X, Xiang W	Arch Microbiol	10.1007/s00203-017-1353-6	2017	*
Phylogeny	Streptomyces liliifuscus sp. nov and an anti-ginger plague agent Streptomyces liliiviolaceus sp. nov, two novel species isolated from soil of Lilium lancifolium.	Li K, Man Y, Liu J, Liu Z, Ma H, Zhu H, Zhou Y, Zhang C, Zhou X	Int J Syst Evol Microbiol	10.1099/ijsem.0.005340	2022	*

References

#9429

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40278

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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