Name: Streptomyces umbrinus DSM 40278
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16061

Type strain:

Species: Streptomyces umbrinus

Culture col. no.: DSM 40278, ATCC 19929, ATCC 25503, CBS 645.69, IFO 13091, INA 1703, ISP 5278, NBRC 13091, RIA 1283, JCM 4521, BCRC 15129, CGMCC 4.1791, INA 1703/53, NRRL B-2572, VKM Ac-1747

Strain history: KCC S-0521 <-- IFO 13091 <-- SAJ <-- ISP 5278 <-- INA 1703/53.

NCBI tax ID(s): 67370 (species)

SI-ID 389294

ATCC 19929, ATCC 25503, IFO 13091, DSM 40278, JCM 4521, NRRL B-2572, VKM Ac-1747, CBS 645.69, NBRC 13091, BCRC 15129, CCRC 15129, CGMCC 4.1791, LMG 20280

Other strains from Streptomyces umbrinus

S. umbrinus DSM 41174, IMRU 3842
S. umbrinus ST005095(HKI), IMET 40277

Section

Streptomyces umbrinus DSM 40278 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces umbrinus**
	Full Scientific Name (LPSN)	Streptomyces umbrinus (Sveshnikova 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonym

"Actinomyces umbrinus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9429]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9429]

Culture medium growth

[Ref.: #9429]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9429]

Culture medium composition

expand / minimize

[Ref.: #9429]

Culture medium

ISP 5 MEDIUM (DSMZ Medium 993)

[Ref.: #9429]

Culture medium growth

[Ref.: #9429]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9429]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9429]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9429]	Sample type/isolated from	soil
[Ref.: #9429]	Country	USSR
[Ref.: #9429]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9429]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces umbrinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4521	D44209	120	ENA	67370 tax ID	*
[Ref.: #20218]	Streptomyces umbrinus gene for 16S rRNA, partial sequence, strain: NBRC 13091	AB184305	1479	ENA	67370 tax ID	*
[Ref.: #20218]	Streptomyces umbrinus strain NRRL B-2572T 16S ribosomal RNA gene, partial sequence	DQ442549	1538	ENA	67370 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces umbrinus JCM 4521	GCA_014650195	scaffold	GenBank	67370 tax ID
[Ref.: #66792]	Streptomyces umbrinus strain JCM 4521	67370.3	wgs	PATRIC	67370 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces umbrinus JCM 4521 NCBI: GCA_014650195.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces umbrinus strain JCM 4521 PATRIC: 67370.3
[Ref.: #69480]	gram-positive	yes	86.508	no
[Ref.: #69480]	anaerobic	no	99.168	no
[Ref.: #69480]	halophile	no	94.217	no
[Ref.: #69480]	spore-forming	yes	93.547	no
[Ref.: #69480]	glucose-util	yes	91.353	no
[Ref.: #69480]	thermophile	no	98.991	yes
[Ref.: #69480]	flagellated	no	97.882	no
[Ref.: #69480]	motile	no	93.235	no
[Ref.: #69480]	aerobic	yes	91.689	no
[Ref.: #69480]	glucose-ferment	no	88.334	no

Availability in culture collections External links

[Ref.: #9429]

Culture collection no.

DSM 40278, ATCC 19929, ATCC 25503, CBS 645.69, IFO 13091, INA 1703, ISP 5278, NBRC 13091, RIA 1283, JCM 4521, BCRC 15129, CGMCC 4.1791, INA 1703/53, NRRL B-2572, VKM Ac-1747

[Ref.: #85134]

SI-ID 389294

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces liliifuscus sp. nov and an anti-ginger plague agent Streptomyces liliiviolaceus sp. nov, two novel species isolated from soil of Lilium lancifolium.	Li K, Man Y, Liu J, Liu Z, Ma H, Zhu H, Zhou Y, Zhang C, Zhou X	Int J Syst Evol Microbiol	10.1099/ijsem.0.005340	2022	*
Phylogeny	Two new species of the genus Streptomyces: Streptomyces camponoti sp. nov. and Streptomyces cuticulae sp. nov. isolated from the cuticle of Camponotus japonicus Mayr.	Piao C, Zheng W, Li Y, Liu C, Jin L, Song W, Yan K, Wang X, Xiang W	Arch Microbiol	10.1007/s00203-017-1353-6	2017	*

References

#9429

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40278

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85134

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389294.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces umbrinus JCM 4521

Streptomyces umbrinus strain JCM 4521

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