Name: Thermaurantimonas aggregans LA
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160363

Type strain:

Species: Thermaurantimonas aggregans

Strain Designation: LA

Culture col. no.: DSM 106522, JCM 31826

Strain history: S. Haruta; Tokyo Metropolitan Univ., Japan; LA.

NCBI tax ID(s): 2173829 (species)

SI-ID 398752

DSM 106522

Special Collections

Section

Thermaurantimonas aggregans LA is a Gram-negative bacterium that forms circular colonies and was isolated from Microbial mat.

colony-forming
Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Schleiferiaceae*
	Genus	*Thermaurantimonas*
	Species	**Thermaurantimonas aggregans**
	Full Scientific Name (LPSN)	Thermaurantimonas aggregans Iino et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69575]	Gram stain	negative

[Ref.: #69575]	Cell length	2.0-4.1 µm

[Ref.: #69575]	Cell width	0.3-0.5 µm

[Ref.: #69575]	Colony color	orange
[Ref.: #69575]	Colony shape	circular
[Ref.: #69575]	Incubation period	1 day
[Ref.: #69575]	Cultivation medium used	R2A agar

Multimedia content

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Caption:

Microscopic image of Thermaurantimonas aggregans DSM 106522

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

		Temperature
[Ref.: #67269]	growth	50 °C
[Ref.: #67770]	growth	50 °C
[Ref.: #69575]	growth	25-60 °C
[Ref.: #69575]	optimum	50 °C

	pH	Kind of pH		pH
[Ref.: #69575]			optimum	7.5
[Ref.: #69575]			growth	6.0-9.5

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69575]		NaCl		growth	3	%(w/v)
[Ref.: #69575]		NaCl		optimum	0.5	%(w/v)

[Ref.: #67770]	Observation	quinones: MK-6
[Ref.: #69575]	Observation	Yeast extract is required for growth

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69575]	amorphous iron (iii) oxide	-	electron acceptor
[Ref.: #69575]	cellobiose ChEBI	-	assimilation
[Ref.: #69575]	D-fructose ChEBI	-	assimilation
[Ref.: #69575]	D-glucose ChEBI	-	assimilation
[Ref.: #69575]	D-mannose ChEBI	-	assimilation
[Ref.: #69575]	D-ribose ChEBI	-	assimilation
[Ref.: #69575]	D-xylose ChEBI	-	assimilation
[Ref.: #69575]	dioxygen ChEBI	+	electron acceptor
[Ref.: #69575]	elemental sulfur ChEBI	-	electron acceptor
[Ref.: #69575]	iron trichloride ChEBI	-	electron acceptor
[Ref.: #69575]	L-arabinose ChEBI	-	assimilation
[Ref.: #69575]	lactose ChEBI	-	assimilation
[Ref.: #69575]	maltose ChEBI	+	assimilation
[Ref.: #69575]	nitrate ChEBI	-	electron acceptor
[Ref.: #69575]	nitrite ChEBI	-	electron acceptor
[Ref.: #69575]	sucrose ChEBI	-	assimilation
[Ref.: #69575]	sulfate ChEBI	-	electron acceptor
[Ref.: #69575]	sulfite ChEBI	-	electron acceptor
[Ref.: #69575]	thiosulfate ChEBI	-	electron acceptor
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #69575]

Fatty acid	Percentage
C15:0 iso	22.9
C15:0	17.6
C17:0 iso 3OH	11.9
C15:0 2OH	8.9
C16:1 w7c /C16:1 w6c	8.7
C15:1 iso G	4.9
C15:0 iso 3OH	4.1
C17:1 w6c	4
C17:0 3OH	3.9
C16:0 iso	3.6
C13:0 3OH / C15:1 iso h	2.8
C15:0 3OH	2.5
C16:0 iso 3OH	2.1
C16:0	1.2
C16 :0 3OH	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67269]	Sample type/isolated from	Microbial mat
[Ref.: #67269]	Geographic location (country and/or sea, region)	Nakabusa Hot Springs, Nagano
[Ref.: #67269]	Country	Japan
[Ref.: #67269]	Country ISO 3 Code	JPN
[Ref.: #67269]	Continent	Asia
[Ref.: #67269]	Geographic location	36.3889°/137.7390°

[Ref.: #67770]	Sample type/isolated from	Microbial mats of a hot spring in Nakabusa
[Ref.: #67770]	Geographic location (country and/or sea, region)	Nagano
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #69575]	Sample type/isolated from	the microbial mats of a hot spring in Nakabusa, Nagano, Japan.
[Ref.: #69575]	Geographic location (country and/or sea, region)	Nakabusa, Nagano
[Ref.: #69575]	Country	Japan
[Ref.: #69575]	Country ISO 3 Code	JPN
[Ref.: #69575]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thermaurantimonas aggregans LA gene for 16S ribosomal RNA, partial sequence	LC381760	1443	GenBank ENA	2173829 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thermaurantimonas aggregans LA	GCA_003851885	contig	GenBank ENA	2173829 tax ID
[Ref.: #69575]	genome sequence	BHZE00000000		GenBank ENA	2173829 tax ID
[Ref.: #66792]	Thermaurantimonas aggregans LA	2882211637	draft	JGI IMG/M	2173829 tax ID	*

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GC-content

42.6 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67269]

Culture collection no.

DSM 106522, JCM 31826

[Ref.: #112612]

SI-ID 398752

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermaurantimonas aggregans gen. nov., sp. nov., a moderately thermophilic heterotrophic aggregating bacterium isolated from microbial mats at a terrestrial hot spring.	Iino T, Kawai S, Yuki M, Dekio I, Ohkuma M, Haruta S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003888	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67269

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106522

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69575

Takao Iino, Shigeru Kawai, Masahiro Yuki, Itaru Dekio, Moriya Ohkuma and Shin Haruta: Thermaurantimonas aggregans gen. nov., sp. nov., a moderately thermophilic heterotrophic aggregating bacterium isolated from microbial mats at a terrestrial hot spring. IJSEM 70: 2019 ( DOI 10.1099/ijsem.0.003888 )

#112612

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398752.1 )

* These data were automatically processed and therefore are not curated

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