Strain identifier

BacDive ID: 160363

Type strain: Yes

Species: Thermaurantimonas aggregans

Strain Designation: LA

Strain history: S. Haruta; Tokyo Metropolitan Univ., Japan; LA.

NCBI tax ID(s): 2173829 (species)

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General

@ref: 67269

BacDive-ID: 160363

DSM-Number: 106522

keywords: genome sequence, 16S sequence, Bacteria, Gram-negative, colony-forming

description: Thermaurantimonas aggregans LA is a Gram-negative bacterium that forms circular colonies and was isolated from Microbial mat.

NCBI tax id

  • NCBI tax id: 2173829
  • Matching level: species

strain history

@refhistory
67269<- S. Haruta, Tokyo Metropolitan University, Hachioji, Japan; LA
67770S. Haruta; Tokyo Metropolitan Univ., Japan; LA.

doi: 10.13145/bacdive160363.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Schleiferiaceae
  • genus: Thermaurantimonas
  • species: Thermaurantimonas aggregans
  • full scientific name: Thermaurantimonas aggregans Iino et al. 2020

@ref: 67269

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Schleiferiaceae

genus: Thermaurantimonas

species: Thermaurantimonas aggregans

full scientific name: Thermaurantimonas aggregans Iino et al. 2020

strain designation: LA

type strain: yes

Morphology

cell morphology

  • @ref: 69575
  • gram stain: negative
  • cell length: 2.0-4.1 µm
  • cell width: 0.3-0.5 µm

colony morphology

  • @ref: 69575
  • colony color: orange
  • colony shape: circular
  • incubation period: 1 day
  • medium used: R2A agar

multimedia

  • @ref: 67269
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_106522.jpg
  • caption: Microscopic image of Thermaurantimonas aggregans DSM 106522
  • intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
67269R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
69575Reasoner's 2A agar (R2A)yes

culture temp

@refgrowthtypetemperature
67269positivegrowth50
67770positivegrowth50
69575positivegrowth25-60
69575positiveoptimum50

culture pH

@refabilitytypepH
69575positivegrowth6.0-9.5
69575positiveoptimum7.5

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
69575NaClpositivegrowth3 %(w/v)
69575NaClpositiveoptimum0.5 %(w/v)

observation

@refobservation
67770quinones: MK-6
69575Yeast extract is required for growth

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6957517057cellobiose-assimilation
6957515824D-fructose-assimilation
6957517634D-glucose-assimilation
6957516024D-mannose-assimilation
6957516988D-ribose-assimilation
6957565327D-xylose-assimilation
6957530849L-arabinose-assimilation
6957517716lactose-assimilation
6957517992sucrose-assimilation
69575amorphous iron (iii) oxide-electron acceptor
6957533403elemental sulfur-electron acceptor
6957530808iron trichloride-electron acceptor
6957517632nitrate-electron acceptor
6957516301nitrite-electron acceptor
6957516189sulfate-electron acceptor
6957517359sulfite-electron acceptor
6957516094thiosulfate-electron acceptor
6957517306maltose+assimilation
6957515379dioxygen+electron acceptor

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    69575C13:0 3OH / C15:1 iso h2.8
    69575C15:017.6
    69575C15:0 2OH8.9
    69575C15:0 3OH2.5
    69575C15:0 iso22.9
    69575C15:0 iso 3OH4.1
    69575C15:1 iso G4.9
    69575C16 :0 3OH1.1
    69575C16:01.2
    69575C16:0 iso3.6
    69575C16:0 iso 3OH2.1
    69575C16:1 w7c /C16:1 w6c8.7
    69575C17:0 3OH3.9
    69575C17:0 iso 3OH11.9
    69575C17:1 w6c4
  • type of FA analysis: whole cell analysis
  • incubation medium: Degryse 162
  • agar/liquid: agar
  • incubation temperature: 50
  • incubation time: 2
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
67269Microbial matNakabusa Hot Springs, NaganoJapanJPNAsia36.3889137.739
67770Microbial mats of a hot spring in NakabusaNaganoJapanJPNAsia
69575the microbial mats of a hot spring in Nakabusa, Nagano, Japan.Nakabusa, NaganoJapanJPNAsia

Sequence information

16S sequences

  • @ref: 67770
  • description: Thermaurantimonas aggregans LA gene for 16S ribosomal RNA, partial sequence
  • accession: LC381760
  • length: 1443
  • database: nuccore
  • NCBI tax ID: 2173829

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Thermaurantimonas aggregans LA2882211637draftimg2173829
67770Thermaurantimonas aggregans LAGCA_003851885contigncbi2173829
69575genome sequenceBHZE00000000ncbi2173829

GC content

  • @ref: 67770
  • GC-content: 42.6
  • method: genome sequence analysis

External links

@ref: 67269

culture collection no.: DSM 106522, JCM 31826

straininfo link

  • @ref: 112612
  • straininfo: 398752

literature

  • topic: Phylogeny
  • Pubmed-ID: 31778354
  • title: Thermaurantimonas aggregans gen. nov., sp. nov., a moderately thermophilic heterotrophic aggregating bacterium isolated from microbial mats at a terrestrial hot spring.
  • authors: Iino T, Kawai S, Yuki M, Dekio I, Ohkuma M, Haruta S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003888
  • year: 2020
  • mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hot Springs/*microbiology, Japan, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67269Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-106522Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106522)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69575Takao Iino, Shigeru Kawai, Masahiro Yuki, Itaru Dekio, Moriya Ohkuma and Shin HarutaThermaurantimonas aggregans gen. nov., sp. nov., a moderately thermophilic heterotrophic aggregating bacterium isolated from microbial mats at a terrestrial hot spring10.1099/ijsem.0.003888
112612Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398752.1