Name: Streptomyces tauricus DSM 40560
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16036

Type strain:

Species: Streptomyces tauricus

Culture col. no.: DSM 40560, ATCC 27470, CBS 757.72, IFO 13456, INA 8173, ISP 5560, JCM 4837, NBRC 13456, RIA 1417, BCRC 12822, CGMCC 4.1794, CGMCC 4.2076, IMET 43541, MTCC 1823, NRRL B-12497, VKM Ac-1853

Strain history: KCC S-0837 <-- IFO 13456 <-- SAJ <-- ISP 5560 <-- INA 8173.

NCBI tax ID(s): 68274 (species)

SI-ID 39018

ATCC 27470, IFO 13456, DSM 40560, JCM 4837, CCRC 12822, IMET 43541, NRRL B-12497, VKM Ac-1853, CBS 757.72, NBRC 13456, BCRC 12822, BCC 7126, CGMCC 4.1794, LMG 20301, CGMCC 4.2076

Other strains from Streptomyces tauricus

S. tauricus ST028294(HKI), m39, GT20046038,

Section

Streptomyces tauricus DSM 40560 is a spore-forming, psychrophilic bacterium that produces antibiotic compounds.

antibiotic compound production
spore-forming
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces tauricus**
	Full Scientific Name (LPSN)	Streptomyces tauricus (ex Ivanitskaya et al. 1966) Sveshnikova 1986

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %90.174

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9642]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9642]

Culture medium growth

[Ref.: #9642]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9642]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9642]	growth	20 °C
[Ref.: #18607]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9642]	Temperature range	psychrophilic
[Ref.: #18607]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9642]	Name of produced compound	tauromycetin
[Ref.: #9642]	Name of produced compound	MS-282a
[Ref.: #9642]	Name of produced compound	MS-282b
[Ref.: #20216]	Name of produced compound	Tauromycetin
[Ref.: #67770]	Name of produced compound	Tauromycetin

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18607]		NaCl		maximum	7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18607]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18607]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18607]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18607]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18607]	mannitol ChEBI	+
[Ref.: #18607]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18607]	raffinose ChEBI	+
[Ref.: #18607]	rhamnose ChEBI	+
[Ref.: #18607]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18607]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18607]	162	+	-	-	-	+	+	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AB045879 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	4
Soil Samples	37
Animal Samples	4
Plant Samples	106
Total Samples	151

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18607]	Biosafety level	1	German classification
[Ref.: #9642]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces tauricus gene for 16S rRNA	AB045879	1492	ENA	68274 tax ID	*
[Ref.: #20218]	Streptomyces tauricus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4837	D44399	120	ENA	68274 tax ID	*
[Ref.: #20218]	Streptomyces tauricus 16S ribosomal RNA gene, partial sequence	KC355418	731	ENA	68274 tax ID	*
[Ref.: #20218]	Streptomyces tauricus gene for 16S rRNA, partial sequence, strain: NBRC 13456	AB184417	1468	ENA	68274 tax ID	*
[Ref.: #20218]	Streptomyces tauricus strain NRRL B-12497 16S ribosomal RNA gene, partial sequence	EU594473	1476	ENA	68274 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces tauricus JCM 4837	GCA_014650955	scaffold	GenBank	68274 tax ID	*
[Ref.: #66792]	Streptomyces tauricus strain JCM 4837	68274.3	wgs	PATRIC	68274 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces tauricus JCM 4837 NCBI: GCA_014650955.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces tauricus JCM 4837 NCBI: GCA_014650955.1
[Ref.: #69480]	flagellated	no	97.664	no
[Ref.: #69480]	gram-positive	yes	89.683	no
[Ref.: #69480]	anaerobic	no	99.399	no
[Ref.: #69480]	aerobic	yes	95.29	no
[Ref.: #69480]	halophile	no	95.671	no
[Ref.: #69480]	spore-forming	yes	95.259	no
[Ref.: #69480]	thermophile	no	99.318	yes
[Ref.: #69480]	glucose-util	yes	89.818	yes
[Ref.: #69480]	motile	no	93.982	no
[Ref.: #69480]	glucose-ferment	no	90.528	no

Availability in culture collections External links

[Ref.: #9642]

Culture collection no.

DSM 40560, ATCC 27470, CBS 757.72, IFO 13456, INA 8173, ISP 5560, JCM 4837, NBRC 13456, RIA 1417, BCRC 12822, CGMCC 4.1794, CGMCC 4.2076, IMET 43541, MTCC 1823, NRRL B-12497, VKM Ac-1853

[Ref.: #85109]

SI-ID 39018

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces boluensis sp. nov., isolated from lake sediment.	Tokatli A, Idil O, Veyisoglu A, Saygin H, Guven K, Cetin D, Sahin N	Arch Microbiol	10.1007/s00203-020-01901-3	2020	*
Phylogeny	Two new species of the genus Streptomyces: Streptomyces camponoti sp. nov. and Streptomyces cuticulae sp. nov. isolated from the cuticle of Camponotus japonicus Mayr.	Piao C, Zheng W, Li Y, Liu C, Jin L, Song W, Yan K, Wang X, Xiang W	Arch Microbiol	10.1007/s00203-017-1353-6	2017	*
Phylogeny	Streptomyces songpinggouensis sp. nov., a Novel Actinomycete Isolated from Soil in Sichuan, China.	Guan X, Li W, Liu C, Jin P, Guo S, Wang X, Xiang W	Curr Microbiol	10.1007/s00284-016-1128-3	2016	*
Genetics	MS-282a and MS-282b, new inhibitors of calmodulin-activated myosin light chain kinase from Streptomyces tauricus ATCC 27470.	Nakanishi S, Kita K, Uosaki Y, Yoshida M, Saitoh Y, Mihara A, Kawamoto I, Matsuda Y	J Antibiot (Tokyo)	10.7164/antibiotics.47.855	1994	*

References

#9642

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40560

#18607

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85109

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39018.1 )

* These data were automatically processed and therefore are not curated

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