Strain identifier

BacDive ID: 16036

Type strain: Yes

Species: Streptomyces tauricus

Strain history: KCC S-0837 <-- IFO 13456 <-- SAJ <-- ISP 5560 <-- INA 8173.

NCBI tax ID(s): 68274 (species)

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General

@ref: 9642

BacDive-ID: 16036

DSM-Number: 40560

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, antibiotic compound production

description: Streptomyces tauricus DSM 40560 is a spore-forming bacterium that produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 68274
  • Matching level: species

strain history

@refhistory
9642<- E.B. Shirling, ISP <- G.F. Gauze, INA
67770KCC S-0837 <-- IFO 13456 <-- SAJ <-- ISP 5560 <-- INA 8173.

doi: 10.13145/bacdive16036.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces tauricus
  • full scientific name: Streptomyces tauricus (ex Ivanitskaya et al. 1966) Sveshnikova 1986

@ref: 9642

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces tauricus

full scientific name: Streptomyces tauricus (ex Ivanitskaya et al. 1966) Sveshnikova 1986

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 90.229

Culture and growth conditions

culture medium

  • @ref: 9642
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
9642positivegrowth20
18607positiveoptimum28
67770positivegrowth28

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: aerobe
  • confidence: 90.247

spore formation

@refspore formationconfidence
69480yes92.34
69481yes100

compound production

@refcompound
9642tauromycetin
9642MS-282a
9642MS-282b
20216Tauromycetin
67770Tauromycetin

halophily

  • @ref: 18607
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 7.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1860717234glucose+
1860722599arabinose+
1860717992sucrose-
1860718222xylose-
1860717268myo-inositol+
1860729864mannitol+
1860728757fructose+
1860726546rhamnose+
1860716634raffinose+
1860762968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18607+---+++---+

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_4250.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_135;98_3202;99_4250&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB045879
  • Sequence Identity:
  • Total samples: 151
  • soil counts: 37
  • aquatic counts: 4
  • animal counts: 4
  • plant counts: 106

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
96421Risk group (German classification)
186071German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces tauricus gene for 16S rRNAAB0458791492nuccore68274
20218Streptomyces tauricus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4837D44399120nuccore68274
20218Streptomyces tauricus 16S ribosomal RNA gene, partial sequenceKC355418731nuccore68274
20218Streptomyces tauricus gene for 16S rRNA, partial sequence, strain: NBRC 13456AB1844171468nuccore68274
20218Streptomyces tauricus strain NRRL B-12497 16S ribosomal RNA gene, partial sequenceEU5944731476nuccore68274

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces tauricus JCM 4837GCA_014650955scaffoldncbi68274
66792Streptomyces tauricus strain JCM 483768274.3wgspatric68274

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesyes100no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes90.229no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.379no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes90.247no
69480spore-formingspore-formingAbility to form endo- or exosporesyes92.34no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno95.5no
69480flagellatedmotile2+Ability to perform flagellated movementno88.5no

External links

@ref: 9642

culture collection no.: DSM 40560, ATCC 27470, CBS 757.72, IFO 13456, INA 8173, ISP 5560, JCM 4837, NBRC 13456, RIA 1417, BCRC 12822, CGMCC 4.1794, CGMCC 4.2076, IMET 43541, MTCC 1823, NRRL B-12497, VKM Ac-1853

straininfo link

  • @ref: 85109
  • straininfo: 39018

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics7928670MS-282a and MS-282b, new inhibitors of calmodulin-activated myosin light chain kinase from Streptomyces tauricus ATCC 27470.Nakanishi S, Kita K, Uosaki Y, Yoshida M, Saitoh Y, Mihara A, Kawamoto I, Matsuda YJ Antibiot (Tokyo)10.7164/antibiotics.47.8551994Amino Acid Sequence, Animals, Calcium-Calmodulin-Dependent Protein Kinases/*antagonists & inhibitors, Chemical Phenomena, Chemistry, Physical, Chickens, Fermentation, Furans/chemical synthesis/*isolation & purification/*pharmacology, Molecular Sequence Data, Myosin-Light-Chain Kinase/*antagonists & inhibitors, Streptomyces/chemistry/*metabolismEnzymology
Phylogeny27582093Streptomyces songpinggouensis sp. nov., a Novel Actinomycete Isolated from Soil in Sichuan, China.Guan X, Li W, Liu C, Jin P, Guo S, Wang X, Xiang WCurr Microbiol10.1007/s00284-016-1128-32016Bacterial Typing Techniques, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Streptomyces/classification/genetics/*isolation & purification/metabolismMetabolism
Phylogeny28382471Two new species of the genus Streptomyces: Streptomyces camponoti sp. nov. and Streptomyces cuticulae sp. nov. isolated from the cuticle of Camponotus japonicus Mayr.Piao C, Zheng W, Li Y, Liu C, Jin L, Song W, Yan K, Wang X, Xiang WArch Microbiol10.1007/s00203-017-1353-62017Animals, Ants/*microbiology, Bacterial Typing Techniques, China, DNA Gyrase/genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Streptomyces/classification/genetics/isolation & purificationTranscriptome
Phylogeny32556421Streptomyces boluensis sp. nov., isolated from lake sediment.Tokatli A, Idil O, Veyisoglu A, Saygin H, Guven K, Cetin D, Sahin NArch Microbiol10.1007/s00203-020-01901-32020Diaminopimelic Acid/analysis, Fatty Acids/analysis, Geologic Sediments/*microbiology, Lakes/*microbiology, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity, Streptomyces/chemistry/*classification/genetics/isolation & purification, Vitamin K 2/analysisEnzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9642Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40560)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40560
18607Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40560.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85109Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID39018.1StrainInfo: A central database for resolving microbial strain identifiers