Lactobacillus nasalidis (DSM 110539, JCM 33769, YZ01)

Name: Lactobacillus nasalidis (DSM 110539, JCM 33769, YZ01)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160218

Type strain

Strain Designation YZ01

Culture col. no. DSM 110539 JCM 33769 YZ01

NCBI tax ID(s) 2797258

Special Collections DSMZ JCM

History DSMZ <- K. Ushida, Chubu University; YZ01 JCM <-- K. Ushida; Chubu Univ., Japan; YZ01.

Links

Lactobacillus nasalidis YZ01 is a bacterium that was isolated from Probocis monkey, forestomach content.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405797

LMG 33506,JCM 33769,DSM 110539

@ref 20215

Last LPSN update 2026-05-29 08:44:23

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lactobacillus

Species Lactobacillus nasalidis

Full scientific name Lactobacillus nasalidis Suzuki-Hashido et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125438	positive	94.389
125438		96.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67122	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
67122	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate anaerobe	98.049

Spore formation

@ref	Spore formation	Confidence
125439		99.841

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
67122	Probocis monkey, forestomach content		Yokohama city	Japan	JPN	Asia
67770	Forestomach of a captive proboscis monkey (Nasalis larvatus)	Nasalis larvatus	Yokohama Zoo	Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1658777v1 assembly for Lactobacillus nasalidis YZ01	scaffold	GCA_016587775	2797258.3	2996571885	2797258	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Lactobacillus nasalidis YZ01 gene for 16S ribosomal RNA, partial sequence	LC495593	1442		2797258

GC content

@ref	GC-content (mol%)	Method
67770	51.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1658777v1 assembly for Lactobacillus nasalidis YZ01
BV-BRC: 2797258.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	98.05	no
125439	gram_stain	BacteriaNetⓘ	negative	84.96	no
125439	motility	BacteriaNetⓘ	no	81.59	no
125439	spore_formation	BacteriaNetⓘ	no	99.84	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus sp. YZ01
PATRIC: 2797258.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	94.39	no
125438	anaerobic	anaerobicⓘ	no	77.78	no
125438	spore-forming	spore-formingⓘ	no	87.42	no
125438	aerobic	aerobicⓘ	no	96.90	no
125438	thermophilic	thermophileⓘ	no	94.27	yes
125438	flagellated	motile2+ⓘ	no	96.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus nasalidis sp. nov., isolated from the forestomach of a captive proboscis monkey (Nasalis larvatus).	Suzuki-Hashido N, Tsuchida S, Hayakawa T, Sakamoto M, Azumano A, Seino S, Matsuda I, Ohkuma M, Ushida K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004787	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67122	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110539
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lactobacillus nasalidis (DSM 110539, JCM 33769, YZ01)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_016587775

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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