Name: Lactobacillus nasalidis YZ01
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160218

Type strain:

Species: Lactobacillus nasalidis

Strain Designation: YZ01

Culture col. no.: DSM 110539, JCM 33769

Strain history: K. Ushida; Chubu Univ., Japan; YZ01.

NCBI tax ID(s): 2797258 (species)

SI-ID 405797

DSM 110539

Section

Lactobacillus nasalidis YZ01 is a mesophilic bacterium that was isolated from Probocis monkey, forestomach content.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactobacillus*
	Species	**Lactobacillus nasalidis**
	Full Scientific Name (LPSN)	Lactobacillus nasalidis Suzuki-Hashido et al. 2021

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67122]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #67122]

Culture medium growth

[Ref.: #67122]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67122]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67122]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #67122]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67122]	Sample type/isolated from	Probocis monkey, forestomach content
[Ref.: #67122]	Geographic location (country and/or sea, region)	Yokohama city
[Ref.: #67122]	Country	Japan
[Ref.: #67122]	Country ISO 3 Code	JPN
[Ref.: #67122]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Forestomach of a captive proboscis monkey (Nasalis larvatus)
[Ref.: #67770]	Host species	Nasalis larvatus
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yokohama Zoo
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus nasalidis YZ01 gene for 16S ribosomal RNA, partial sequence	LC495593	1442	ENA	2797258 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus nasalidis YZ01	GCA_016587775	scaffold	GenBank	2797258 tax ID
[Ref.: #66792]	Lactobacillus sp. YZ01	2797258.3	wgs	PATRIC	2797258 tax ID	*

[Ref.: #67770]

GC-content

51.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus sp. YZ01 PATRIC: 2797258.3
[Ref.: #69480]	motile	no	94.514	no
[Ref.: #69480]	gram-positive	yes	95.121	no
[Ref.: #69480]	anaerobic	no	55.535	no
[Ref.: #69480]	halophile	yes	84.761	no
[Ref.: #69480]	spore-forming	no	95.397	no
[Ref.: #69480]	glucose-util	yes	90.657	no
[Ref.: #69480]	flagellated	no	97.402	no
[Ref.: #69480]	aerobic	no	97.225	no
[Ref.: #69480]	thermophile	no	99.088	no
[Ref.: #69480]	glucose-ferment	yes	87.871	no

Availability in culture collections External links

[Ref.: #67122]

Culture collection no.

DSM 110539, JCM 33769

[Ref.: #112482]

SI-ID 405797

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus nasalidis sp. nov., isolated from the forestomach of a captive proboscis monkey (Nasalis larvatus).	Suzuki-Hashido N, Tsuchida S, Hayakawa T, Sakamoto M, Azumano A, Seino S, Matsuda I, Ohkuma M, Ushida K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004787	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67122

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110539

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#112482

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405797.1 )

* These data were automatically processed and therefore are not curated

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Lactobacillus sp. YZ01

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