Name: Limosilactobacillus rudii STM3_1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160219

Type strain:

Species: Limosilactobacillus rudii

Strain Designation: STM3_1

Culture col. no.: DSM 110572

Strain history: <- F. Li, Univ. Alberta, Edmonton, Canada; STM3_1

NCBI tax ID(s): 2759755 (species)

SI-ID 402109

DSM 110572

Special Collections

DSMZ

Section

When using BacDive for research please cite our paper

Limosilactobacillus rudii STM3_1 is a mesophilic bacterium that was isolated from gastrointestinal tract of striped mouse .

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Limosilactobacillus*
	Species	**Limosilactobacillus rudii**
	Full Scientific Name (LPSN)	Limosilactobacillus rudii Li et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	positive Confidence in %94.172
[Ref.: #125439]	Gram stain	positive Confidence in %91.4

[Ref.: #125438]	Motility	no Confidence in %90.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67123]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #67123]

Culture medium growth

[Ref.: #67123]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67123]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67123]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

microaerophile Confidence in %97.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67123]	Sample type/isolated from	gastrointestinal tract of striped mouse ( Rhabdomys pumilio )
[Ref.: #67123]	Geographic location (country and/or sea, region)	Ohoma, Nebraska
[Ref.: #67123]	Country	USA
[Ref.: #67123]	Country ISO 3 Code	USA
[Ref.: #67123]	Continent	North America
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Limosilactobacillus rudii STM3_1	GCA_014145455	contig	GenBank ENA	2759755 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Limosilactobacillus rudii STM3_1 NCBI: GCA_014145455.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	94.172	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	78.06	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	92.766	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	84.653	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.375	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	90.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Limosilactobacillus rudii STM3_1 NCBI: GCA_014145455
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	82.3
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	82.1
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	91.4
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	microaerophile	97.2

Availability in culture collections External links

[Ref.: #67123]

Culture collection no.

DSM 110572

[Ref.: #112483]

SI-ID 402109

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Limosilactobacillus balticus sp. nov., Limosilactobacillus agrestis sp. nov., Limosilactobacillus albertensis sp. nov., Limosilactobacillus rudii sp. nov. and Limosilactobacillus fastidiosus sp. nov., five novel Limosilactobacillus species isolated from the vertebrate gastrointestinal tract, and proposal of six subspecies of Limosilactobacillus reuteri adapted to the gastrointestinal tract of specific vertebrate hosts.	Li F, Cheng CC, Zheng J, Liu J, Quevedo RM, Li J, Roos S, Ganzle MG, Walter J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004644	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67123

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110572

#112483

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402109.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Limosilactobacillus rudii in external resources:
SILVA
BRENDA
PANGAEA
GBIF