Name: Alloscardovia theropitheci GLDI 4/2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160006

Type strain:

Species: Alloscardovia theropitheci

Strain Designation: GLDI 4/2, GLDI4/2

Culture col. no.: DSM 106019, JCM 32430

Strain history: P. Mattarelli; Dept. of Agric. Sci., Bologna Univ., Italy; GLDI 4/2.

NCBI tax ID(s): 2496842 (species)

SI-ID 398782

DSM 106019

Section

Alloscardovia theropitheci GLDI 4/2 is an anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from Feces of Theropitecus gelada.

colony-forming
Gram-positive
pleomorphic-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Alloscardovia*
	Species	**Alloscardovia theropitheci**
	Full Scientific Name (LPSN)	Alloscardovia theropitheci Modesto et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #68187]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #68187]	Cell length	0.7-1.3 µm

[Ref.: #68187]	Cell width	0.2-0.6 µm

[Ref.: #68187]	Cell shape	pleomorphic-shaped

[Ref.: #68187]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.937

[Ref.: #68187]	Colony size	1-2 mm
[Ref.: #68187]	Colony color	white
[Ref.: #68187]	Colony shape	circular
[Ref.: #68187]	Incubation period	3 days
[Ref.: #68187]	Cultivation medium used	TPY

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66910]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #66910]

Culture medium growth

[Ref.: #66910]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66910]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #66910]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #68187]	growth	0-46 °C
[Ref.: #68187]	optimum	37 °C

[Ref.: #66910]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68187]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68187]			optimum	6.5
[Ref.: #68187]			growth	4.0-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %97.019

[Ref.: #68187]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #68187]

Observation

Mainly, they are arranged singly and are not branched at termination.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68187]	amygdalin ChEBI	+	builds acid from
[Ref.: #68187]	arbutin ChEBI	+	builds acid from
[Ref.: #68187]	cellobiose ChEBI	+	builds acid from
[Ref.: #68187]	D-arabinose ChEBI	+	builds acid from
[Ref.: #68187]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68187]	D-fructose ChEBI	+/-	builds acid from
[Ref.: #68187]	D-fucose ChEBI	-	builds acid from
[Ref.: #68187]	D-galactose ChEBI	+/-	builds acid from
[Ref.: #68187]	D-glucose ChEBI	-	builds acid from
[Ref.: #68187]	D-lyxose ChEBI	-	builds acid from
[Ref.: #68187]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68187]	D-mannose ChEBI	+	builds acid from
[Ref.: #68187]	D-ribose ChEBI	+/-	builds acid from
[Ref.: #68187]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #68187]	D-tagatose ChEBI	-	builds acid from
[Ref.: #68187]	D-xylose ChEBI	-	builds acid from
[Ref.: #68187]	erythritol ChEBI	-	builds acid from
[Ref.: #68187]	esculin ChEBI	+	hydrolysis
[Ref.: #68187]	esculin ferric citrate	-	builds acid from
[Ref.: #68187]	galactitol ChEBI	-	builds acid from
[Ref.: #68187]	gentiobiose ChEBI	-	builds acid from
[Ref.: #68187]	glycerol ChEBI	-	builds acid from
[Ref.: #68187]	glycogen ChEBI	-	builds acid from
[Ref.: #68187]	inulin ChEBI	-	builds acid from
[Ref.: #68187]	L-arabinose ChEBI	+/-	builds acid from
[Ref.: #68187]	L-arabitol ChEBI	-	builds acid from
[Ref.: #68187]	L-fucose ChEBI	-	builds acid from
[Ref.: #68187]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #68187]	L-sorbose ChEBI	-	builds acid from
[Ref.: #68187]	L-xylose ChEBI	-	builds acid from
[Ref.: #68187]	lactose ChEBI	+	builds acid from
[Ref.: #68187]	maltose ChEBI	-	builds acid from
[Ref.: #68187]	melezitose ChEBI	+	builds acid from
[Ref.: #68187]	melibiose ChEBI	+/-	builds acid from
[Ref.: #68187]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #68187]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #68187]	methyl beta-D-xylopyranoside ChEBI	+/-	builds acid from
[Ref.: #68187]	myo-inositol ChEBI	-	builds acid from
[Ref.: #68187]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #68187]	nitrate ChEBI	-	reduction
[Ref.: #68187]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #68187]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #68187]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #68187]	raffinose ChEBI	+	builds acid from
[Ref.: #68187]	ribitol ChEBI	-	builds acid from
[Ref.: #68187]	salicin ChEBI	-	builds acid from
[Ref.: #68187]	starch ChEBI	-	builds acid from
[Ref.: #68187]	sucrose ChEBI	-	builds acid from
[Ref.: #68187]	trehalose ChEBI	-	builds acid from
[Ref.: #68187]	turanose ChEBI	-	builds acid from
[Ref.: #68187]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68187]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68187]	alanine arylamidase	+	3.4.11.2
[Ref.: #68187]	alpha-arabinosidase	+
[Ref.: #68187]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68187]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68187]	arginine arylamidase	+
[Ref.: #68187]	beta-galactosidase	+	3.2.1.23
[Ref.: #68187]	beta-glucosidase	+	3.2.1.21
[Ref.: #68187]	catalase	-	1.11.1.6
[Ref.: #68187]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68187]	fructose-6-phosphate phosphoketolase	+	4.1.2.22
[Ref.: #68187]	glycin arylamidase	+
[Ref.: #68187]	histidine arylamidase	+
[Ref.: #68187]	leucine arylamidase	+	3.4.11.1
[Ref.: #68187]	leucyl glycin arylamidase	+	3.4.11.1
[Ref.: #68187]	phenylalanine arylamidase	+
[Ref.: #68187]	proline-arylamidase	+	3.4.11.5
[Ref.: #68187]	serine arylamidase	+
[Ref.: #68187]	tyrosine arylamidase	+
[Ref.: #68187]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66910]	Sample type/isolated from	Feces of Theropitecus gelada
[Ref.: #66910]	Geographic location (country and/or sea, region)	Bussolengo, Verona
[Ref.: #66910]	Country	Italy
[Ref.: #66910]	Country ISO 3 Code	ITA
[Ref.: #66910]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Feces of an adult gelada baboon (Theropithecus gelada), in Parco Natura Viva
[Ref.: #67770]	Host species	Theropithecus gelada
[Ref.: #67770]	Geographic location (country and/or sea, region)	Garda Zoological Park (Bussolengo, Verona
[Ref.: #67770]	Country	Italy
[Ref.: #67770]	Country ISO 3 Code	ITA
[Ref.: #67770]	Continent	Europe

[Ref.: #68187]	Sample type/isolated from	faeces of an adult gelada baboon (Theropithecus gelada)
[Ref.: #68187]	Sampling date	2016-11-01
[Ref.: #68187]	Geographic location (country and/or sea, region)	Parco Natura Viva, Garda Zoological Park (Bussolengo, Verona)
[Ref.: #68187]	Country	Italy
[Ref.: #68187]	Country ISO 3 Code	ITA
[Ref.: #68187]	Continent	Europe
[Ref.: #68187]	Enrichment culture	TPY agar
[Ref.: #68187]	Enrichment culture composition	supplemented with 100 mg/l mupirocin
[Ref.: #68187]	Enrichment culture duration	2-3 days
[Ref.: #68187]	Enrichment culture temperature	37 ̊C
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66910]	Alloscardovia theropitheci 16S ribosomal RNA gene, partial sequence	MK614057	1386	ENA	2496842 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alloscardovia theropitheci GLDI4/2	GCA_004332295	scaffold	GenBank	2496842 tax ID
[Ref.: #66792]	Alloscardovia theropitheci GLDI4/2	2867453920	draft	JGI IMG/M	2496842 tax ID	*

[Ref.: #68187]

GC-content

43.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alloscardovia theropitheci GLDI4/2 NCBI: GCA_004332295.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #66910]

Culture collection no.

DSM 106019, JCM 32430

[Ref.: #112286]

SI-ID 398782

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alloscardovia theropitheci sp. nov., isolated from the faeces of gelada baboon, the 'bleeding heart' monkey (Theropithecus gelada).	Modesto M, Satti M, Watanabe K, Sciavilla P, Felis GE, Sandri C, Spiezio C, Arita M, Mattarelli P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003584	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66910

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106019

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68187

Monica Modesto, Maria Satti, Koichi Watanabe, Piero Sciavilla, Giovanna E. Felis, Camillo Sandri, Caterina Spiezio, Masanori Arita and Paola Mattarelli: Alloscardovia theropitheci sp. nov., isolated from the faeces of gelada baboon, the 'bleeding heart' monkey (Theropithecus gelada). IJSEM 69: 3041 - 3048 2019 ( DOI 10.1099/ijsem.0.003584 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112286

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398782.1 )

* These data were automatically processed and therefore are not curated

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Alloscardovia theropitheci GLDI4/2

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