Amedibacterium intestinale (DSM 110575, JCM 33778, 9CBEGH2)

Name: Amedibacterium intestinale (DSM 110575, JCM 33778, 9CBEGH2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160007

Type strain

Strain Designation 9CBEGH2

Culture col. no. DSM 110575 JCM 33778 9CBEGH2

NCBI tax ID(s) 2583452

Special Collections DSMZ JCM

Links

Amedibacterium intestinale 9CBEGH2 is a mesophilic prokaryote that was isolated from human feces.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 27959

KCTC 15422,JCM 30884,JCM 33778

@ref 20215

Last LPSN update 2025-12-16 10:08:23

Domain Bacillati

Phylum Bacillota

Class Erysipelotrichia

Order Erysipelotrichales

Family Erysipelotrichaceae

Genus Amedibacterium

Species Amedibacterium intestinale

Full scientific name Amedibacterium intestinale Ikeyama et al. 2020

Synonyms (1)

Absiella argi

BacDive ID	Other strains from **Amedibacterium intestinale** (5)	Type strain
163897	A. intestinale JCM 30883, KCTC 15421
163898	A. intestinale JCM 30884, KCTC 15422
164646	A. intestinale JCM 33779
164647	A. intestinale JCM 33780
164648	A. intestinale JCM 33781

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66911	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)		Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66911	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	95.6

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66911	human feces	Tsukuba	Japan	JPN	Asia
67770	Feces of a woman in the forties		Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC509015 (>99% sequence identity) for Erysipelotrichaceae from Microbeatlas

Aquatic Samples	1282
Soil Samples	211
Animal Samples	21280
Plant Samples	117
Total Samples	22890

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1053733v1 assembly for Amedibacterium intestinale 9CBEGH2	complete	GCA_010537335	2583452.3	2884068351	2583452	97.55

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66911	Amedibacterium intestinale 9CBEGH2 gene for 16S ribosomal RNA, partial sequence	LC509015	1482		2583452

GC content

@ref	GC-content (mol%)	Method
67770	33.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Amedibacterium intestinale 9CBEGH2
NCBI: GCA_010537335

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	89.10	no
125439	motility	BacteriaNetⓘ	yes	84.00	no
125439	gram_stain	BacteriaNetⓘ	variable	76.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	95.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Amedibacterium intestinale 9CBEGH2
NCBI: GCA_010537335.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	83.79	no
125438	anaerobic	anaerobicⓘ	yes	79.57	no
125438	aerobic	aerobicⓘ	no	97.59	no
125438	spore-forming	spore-formingⓘ	no	66.98	no
125438	thermophilic	thermophileⓘ	no	92.85	yes
125438	flagellated	motile2+ⓘ	no	85.47	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amedibacterium intestinale gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium dolichum Moore et al. 1976 (Approved Lists 1980) as Amedibacillus dolichus gen. nov., comb. nov.	Ikeyama N, Toyoda A, Morohoshi S, Kunihiro T, Murakami T, Mori H, Iino T, Ohkuma M, Sakamoto M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004215	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66911	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110575
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Amedibacterium intestinale (DSM 110575, JCM 33778, 9CBEGH2)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_010537335

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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