Strain identifier

BacDive ID: 160006

Type strain: Yes

Species: Alloscardovia theropitheci

Strain Designation: GLDI 4/2, GLDI4/2

Strain history: P. Mattarelli; Dept. of Agric. Sci., Bologna Univ., Italy; GLDI 4/2.

NCBI tax ID(s): 2496842 (species)

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General

@ref: 66910

BacDive-ID: 160006

DSM-Number: 106019

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, pleomorphic-shaped, colony-forming

description: Alloscardovia theropitheci GLDI 4/2 is an anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from Feces of Theropitecus gelada.

NCBI tax id

  • NCBI tax id: 2496842
  • Matching level: species

strain history

@refhistory
66910<- P. Mattarelli, Dept. Agricult. Scs., Univ. Bologna, Italy; GLDI 4/2 <- M. Modesto
67770P. Mattarelli; Dept. of Agric. Sci., Bologna Univ., Italy; GLDI 4/2.

doi: 10.13145/bacdive160006.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Alloscardovia
  • species: Alloscardovia theropitheci
  • full scientific name: Alloscardovia theropitheci Modesto et al. 2019

@ref: 66910

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Alloscardovia

species: Alloscardovia theropitheci

full scientific name: Alloscardovia theropitheci Modesto et al. 2019

strain designation: GLDI 4/2, GLDI4/2

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
68187positive0.7-1.3 µm0.2-0.6 µmpleomorphic-shapedno
69480no93.937
69480positive100

colony morphology

  • @ref: 68187
  • colony size: 1-2 mm
  • colony color: white
  • colony shape: circular
  • incubation period: 3 days
  • medium used: TPY

Culture and growth conditions

culture medium

  • @ref: 66910
  • name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/58
  • composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water

culture temp

@refgrowthtypetemperaturerange
66910positivegrowth37mesophilic
67770positivegrowth37mesophilic
68187positivegrowth0-46
68187positiveoptimum37mesophilic

culture pH

@refabilitytypepHPH range
68187positivegrowth4.0-7.5acidophile
68187positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 97.019

spore formation

@refspore formationconfidence
68187no
69480no99.999
69481no100

observation

  • @ref: 68187
  • observation: Mainly, they are arranged singly and are not branched at termination.

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68187esculin ferric citrate-builds acid from
68187D-xylose-builds acid from65327
68187D-ribose+/-builds acid from16988
68187potassium 5-dehydro-D-gluconate-builds acid from
68187L-arabinose+/-builds acid from30849
68187D-tagatose-builds acid from16443
68187D-glucose-builds acid from17634
68187maltose-builds acid from17306
68187potassium 2-dehydro-D-gluconate-builds acid from
68187trehalose-builds acid from27082
68187turanose-builds acid from32528
68187D-galactose+/-builds acid from12936
68187D-fructose+/-builds acid from15824
68187sucrose-builds acid from17992
68187cellobiose+builds acid from17057
68187melibiose+/-builds acid from28053
68187arbutin+builds acid from18305
68187D-mannose+builds acid from16024
68187salicin-builds acid from17814
68187lactose+builds acid from17716
68187D-mannitol-builds acid from16899
68187glycogen-builds acid from28087
68187starch-builds acid from28017
68187D-arabinose+builds acid from17108
68187melezitose+builds acid from6731
68187L-fucose-builds acid from18287
68187L-rhamnose-builds acid from62345
68187gentiobiose-builds acid from28066
68187D-sorbitol-builds acid from17924
68187D-arabitol-builds acid from18333
68187D-lyxose-builds acid from62318
68187D-fucose-builds acid from28847
68187glycerol-builds acid from17754
68187N-acetylglucosamine-builds acid from59640
68187methyl alpha-D-glucopyranoside-builds acid from320061
68187myo-inositol-builds acid from17268
68187potassium gluconate-builds acid from32032
68187methyl beta-D-xylopyranoside+/-builds acid from74863
68187raffinose+builds acid from16634
68187amygdalin+builds acid from27613
68187methyl alpha-D-mannoside-builds acid from43943
68187erythritol-builds acid from17113
68187L-xylose-builds acid from65328
68187ribitol-builds acid from15963
68187L-sorbose-builds acid from17266
68187galactitol-builds acid from16813
68187inulin-builds acid from15443
68187xylitol-builds acid from17151
68187L-arabitol-builds acid from18403
68187esculin+hydrolysis4853
68187nitrate-reduction17632

metabolite production

  • @ref: 68187
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68187alanine arylamidase+3.4.11.2
68187alpha-arabinosidase+
68187arginine arylamidase+
68187alpha-galactosidase+3.2.1.22
68187beta-galactosidase+3.2.1.23
68187alpha-glucosidase+3.2.1.20
68187beta-glucosidase+3.2.1.21
68187glycin arylamidase+
68187histidine arylamidase+
68187leucine arylamidase+3.4.11.1
68187leucyl glycin arylamidase+3.4.11.1
68187phenylalanine arylamidase+
68187proline-arylamidase+3.4.11.5
68187serine arylamidase+
68187tyrosine arylamidase+
68187urease-3.5.1.5
68187fructose-6-phosphate phosphoketolase+4.1.2.22
68187catalase-1.11.1.6
68187cytochrome oxidase-1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinenthost speciessampling dateenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperature
66910Feces of Theropitecus geladaBussolengo, VeronaItalyITAEurope
67770Feces of an adult gelada baboon (Theropithecus gelada), in Parco Natura VivaGarda Zoological Park (Bussolengo, VeronaItalyITAEuropeTheropithecus gelada
68187faeces of an adult gelada baboon (Theropithecus gelada)Parco Natura Viva, Garda Zoological Park (Bussolengo, Verona)ItalyITAEurope2016-11-01TPY agarsupplemented with 100 mg/l mupirocin2-3 days37

Sequence information

16S sequences

  • @ref: 66910
  • description: Alloscardovia theropitheci 16S ribosomal RNA gene, partial sequence
  • accession: MK614057
  • length: 1386
  • database: ena
  • NCBI tax ID: 2496842

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alloscardovia theropitheci GLDI4/22867453920draftimg2496842
67770Alloscardovia theropitheci GLDI4/2GCA_004332295scaffoldncbi2496842

GC content

  • @ref: 68187
  • GC-content: 43.8
  • method: genome sequence analysis

Genome-based predictions

predictions

  • trait: spore-forming
  • prediction: no
  • confidence: 100
  • training_data: no

External links

@ref: 66910

culture collection no.: DSM 106019, JCM 32430

straininfo link

  • @ref: 112286
  • straininfo: 398782

literature

  • topic: Phylogeny
  • Pubmed-ID: 31395120
  • title: Alloscardovia theropitheci sp. nov., isolated from the faeces of gelada baboon, the 'bleeding heart' monkey (Theropithecus gelada).
  • authors: Modesto M, Satti M, Watanabe K, Sciavilla P, Felis GE, Sandri C, Spiezio C, Arita M, Mattarelli P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003584
  • year: 2019
  • mesh: Actinobacteria/*classification/isolation & purification, Aldehyde-Lyases, Animals, Animals, Zoo/microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/microbiology, Italy, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Theropithecus/*microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66910Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-106019Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106019)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68187Monica Modesto, Maria Satti, Koichi Watanabe, Piero Sciavilla, Giovanna E. Felis, Camillo Sandri, Caterina Spiezio, Masanori Arita and Paola MattarelliAlloscardovia theropitheci sp. nov., isolated from the faeces of gelada baboon, the 'bleeding heart' monkey (Theropithecus gelada)10.1099/ijsem.0.003584IJSEM 69: 3041-3048 2019
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
112286Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398782.1