Name: Amycolatopsis antarctica AU-G6
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159864

Type strain:

Species: Amycolatopsis antarctica

Strain Designation: AU-G6

Culture col. no.: CGMCC 4.7351, NBRC 112404

NCBI tax ID(s): 1854586 (species)

Special Collections

Literature strains

Section

Amycolatopsis antarctica AU-G6 is an aerobe, Gram-positive, rod-shaped bacterium that builds a substrate mycelium and was isolated from surface of an antarctic brown macroalga Adenocystis utricularis.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Amycolatopsis*
	Species	**Amycolatopsis antarctica**
	Full Scientific Name (LPSN)	Amycolatopsis antarctica Wang et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66596]	Gram stain	positive

[Ref.: #66596]	Cell shape	rod-shaped

[Ref.: #66596]	Motility	no

[Ref.: #66596]	Multicellular complex forming ability	yes
[Ref.: #66596]	Multicellular complex name	substrate mycelium
[Ref.: #66596]	Multicellular complex color	ivory to beige brown
[Ref.: #66596]	Medium Name (multicellularity)	different ISP agar media

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Czapek's agar

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Culture medium growth

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Culture medium

ISP 2

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Culture medium growth

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

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Culture medium growth

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Culture medium

ISP 5

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Culture medium growth

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Culture medium

ISP 6

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Culture medium growth

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Culture medium

ISP 7

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Culture medium growth

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Culture medium

modified Bennett's agar

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Culture medium growth

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Culture medium

potato-dextrose agar

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #66596]	no	growth	37 °C
[Ref.: #66596]		optimum	15-20 °C
[Ref.: #66596]		growth	4-28 °C

	Kind of pH		pH
[Ref.: #66596]		optimum	7-8
[Ref.: #66596]	no	growth	5
[Ref.: #66596]	no	growth	11
[Ref.: #66596]		growth	6-10

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #66596]	NaCl		growth	0.5-7.0	%(w/v)
[Ref.: #66596]	NaCl	no	growth	10	%(w/v)
[Ref.: #66596]	NaCl		optimum	3.0-5.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66596]	acetic acid ChEBI	-	carbon source
[Ref.: #66596]	adenine ChEBI	-	hydrolysis
[Ref.: #66596]	allantoin ChEBI	+	hydrolysis
[Ref.: #66596]	arbutin ChEBI	+	hydrolysis
[Ref.: #66596]	barium chloride ChEBI	+	growth
[Ref.: #66596]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #66596]	casein	+	hydrolysis
[Ref.: #66596]	chitin ChEBI	+/-	hydrolysis
[Ref.: #66596]	citric acid ChEBI	+	carbon source
[Ref.: #66596]	cobalt dichloride ChEBI	-	growth
[Ref.: #66596]	D-fructose ChEBI	+	carbon source
[Ref.: #66596]	D-galactose ChEBI	+/-	carbon source
[Ref.: #66596]	D-glucose ChEBI	+	carbon source
[Ref.: #66596]	D-mannitol ChEBI	+	carbon source
[Ref.: #66596]	D-mannose ChEBI	+/-	carbon source
[Ref.: #66596]	D-sorbitol ChEBI	+	carbon source
[Ref.: #66596]	D-xylose ChEBI	+	carbon source
[Ref.: #66596]	dextran ChEBI	+	carbon source
[Ref.: #66596]	dextrin ChEBI	+/-	carbon source
[Ref.: #66596]	erythritol ChEBI	+/-	carbon source
[Ref.: #66596]	esculin ChEBI	+/-	carbon source
[Ref.: #66596]	esculin ChEBI	+	hydrolysis
[Ref.: #66596]	galactitol ChEBI	+	carbon source
[Ref.: #66596]	gelatin ChEBI	+	hydrolysis
[Ref.: #66596]	glycerol ChEBI	+	carbon source
[Ref.: #66596]	glycine ChEBI	+	nitrogen source
[Ref.: #66596]	guanine ChEBI	-	hydrolysis
[Ref.: #66596]	hippurate ChEBI	+	hydrolysis
[Ref.: #66596]	hydroxyproline ChEBI	+	nitrogen source
[Ref.: #66596]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #66596]	inulin ChEBI	+	carbon source
[Ref.: #66596]	isoleucine ChEBI	+/-	nitrogen source
[Ref.: #66596]	L-alanine ChEBI	+	nitrogen source
[Ref.: #66596]	L-arabinose ChEBI	+	carbon source
[Ref.: #66596]	L-arginine ChEBI	+	nitrogen source
[Ref.: #66596]	L-cysteine ChEBI	+	nitrogen source
[Ref.: #66596]	L-histidine ChEBI	+	nitrogen source
[Ref.: #66596]	L-methionine ChEBI	-	nitrogen source
[Ref.: #66596]	L-phenylalanine ChEBI	+	nitrogen source
[Ref.: #66596]	L-proline ChEBI	+	nitrogen source
[Ref.: #66596]	L-rhamnose ChEBI	+	carbon source
[Ref.: #66596]	L-serine ChEBI	+	nitrogen source
[Ref.: #66596]	L-valine ChEBI	+	nitrogen source
[Ref.: #66596]	lactose ChEBI	+	carbon source
[Ref.: #66596]	maltose ChEBI	+	carbon source
[Ref.: #66596]	melezitose ChEBI	+/-	carbon source
[Ref.: #66596]	melibiose ChEBI	+/-	carbon source
[Ref.: #66596]	myo-inositol ChEBI	+	carbon source
[Ref.: #66596]	nitrate ChEBI	-	reduction
[Ref.: #66596]	oxalate ChEBI	-	carbon source
[Ref.: #66596]	pectin ChEBI	-	hydrolysis
[Ref.: #66596]	potassium tellurite ChEBI	+/-	growth
[Ref.: #66596]	raffinose ChEBI	+/-	carbon source
[Ref.: #66596]	salicin ChEBI	+/-	carbon source
[Ref.: #66596]	sodium azide ChEBI	-	growth
[Ref.: #66596]	starch ChEBI	+	carbon source
[Ref.: #66596]	starch ChEBI	-	hydrolysis
[Ref.: #66596]	succinate ChEBI	+	carbon source
[Ref.: #66596]	sucrose ChEBI	+	carbon source
[Ref.: #66596]	tartrate ChEBI	-	carbon source
[Ref.: #66596]	trehalose ChEBI	+	carbon source
[Ref.: #66596]	tween 20 ChEBI	+	hydrolysis
[Ref.: #66596]	tween 40 ChEBI	+	hydrolysis
[Ref.: #66596]	tween 60 ChEBI	+	hydrolysis
[Ref.: #66596]	tween 80 ChEBI	+	hydrolysis
[Ref.: #66596]	urea ChEBI	+/-	hydrolysis
[Ref.: #66596]	xanthine ChEBI	+/-	hydrolysis
[Ref.: #66596]	xylan ChEBI	-	hydrolysis
[Ref.: #66596]	zinc dichloride ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #66596]	bacitracin ChEBI				yes
[Ref.: #66596]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #66596]	ciprofloxacin ChEBI				yes
[Ref.: #66596]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #66596]	kanamycin ChEBI				yes
[Ref.: #66596]	lincomycin ChEBI				yes
[Ref.: #66596]	norfloxacin ChEBI				yes
[Ref.: #66596]	penicillin g ChEBI	yes	10	Unit (disc)
[Ref.: #66596]	rifampicin ChEBI				yes	5	µg (disc)
[Ref.: #66596]	streptomycin ChEBI				yes
[Ref.: #66596]	teicoplanin ChEBI	yes	30	µg (disc)
[Ref.: #66596]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #66596]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #66596]		hydrogen sulfide ChEBI	no
[Ref.: #66596]		melanin ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #66596]	acid phosphatase	+	3.1.3.2
[Ref.: #66596]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66596]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #66596]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66596]	alpha-galactosidase	-	3.2.1.22
[Ref.: #66596]	alpha-glucosidase	-	3.2.1.20
[Ref.: #66596]	alpha-mannosidase	-	3.2.1.24
[Ref.: #66596]	beta-galactosidase	-	3.2.1.23
[Ref.: #66596]	beta-glucosidase	-	3.2.1.21
[Ref.: #66596]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66596]	catalase	+	1.11.1.6
[Ref.: #66596]	cystine arylamidase	+	3.4.11.3
[Ref.: #66596]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66596]	esterase	+
[Ref.: #66596]	esterase Lipase (C 8)	+
[Ref.: #66596]	leucine arylamidase	+	3.4.11.1
[Ref.: #66596]	lipase	+
[Ref.: #66596]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #66596]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #66596]	trypsin	-	3.4.21.4
[Ref.: #66596]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #66596]

Fatty acid	Percentage
C16:0 iso	42.8
C17:1 w8c	13.5
C15:0 iso	8.1
C17:0	6.6
C16:1 iso H	5.7
C17:1 w6c	3.1
C15:1 w6c	3
C16:0	2.6
C17:0 iso	2.3
C16:1 w7c / C16:1 w6c	2.1
C17:0 10-methyl	2.1
C16:0 10-methyl / iso-C17:1w9c	1.9
C18:0 iso	0.9
C17:0 anteiso	0.9
C18:1 w9c	0.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66596]	Sample type/isolated from	surface of an antarctic brown macroalga Adenocystis utricularis
[Ref.: #66596]	Host species	Adenocystis utricularis
[Ref.: #66596]	Sampling date	2014-01-30
[Ref.: #66596]	Geographic location (country and/or sea, region)	Punta Rodriguez Site, King George Island
[Ref.: #66596]	Country	Antarctica
[Ref.: #66596]	Country ISO 3 Code	ATA
[Ref.: #66596]	Continent	Australia and Oceania
[Ref.: #66596]	Geographic location	-62.1992°/-58.9428°
[Ref.: #66596]	Enrichment culture	ZoBell's marine 2216E medium
* marker position based on {}

Isolation sources categories

#Host	#Algae	#Brown Algae
#Environmental	#Aquatic	#Marine
#Climate	#Cold	#Polar

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66596]	Amycolatopsis antarctica strain AU-G6 16S ribosomal RNA gene, partial sequence	KX084450	1421	GenBank ENA	1854586 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Amycolatopsis antarctica AU-G6	GCA_002262875	contig	GenBank ENA	1854586 tax ID	*
[Ref.: #66792]	Amycolatopsis antarctica AU-G6	2856677671	draft	JGI IMG/M	1854586 tax ID	*

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GC-content

70.30 mol%

genome sequence analysis

Availability in culture collections External links

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Culture collection no.

CGMCC 4.7351, NBRC 112404

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amycolatopsis antarctica sp. nov., isolated from the surface of an Antarctic brown macroalga.	Wang J, Leiva S, Huang J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002844	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66596

Jian Wang, Sergio Leiva, Jiao Huang and Ying Huang: Amycolatopsis antarctica sp. nov., isolated from the surface of an Antarctic brown macroalga. IJSEM 68: 2348 - 2356 2018 ( DOI 10.1099/ijsem.0.002844 , PubMed 29869978 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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