Amycolatopsis antarctica (CGMCC 4.7351, NBRC 112404, AU-G6)

Name: Amycolatopsis antarctica (CGMCC 4.7351, NBRC 112404, AU-G6)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159864

Type strain

Strain Designation AU-G6

Culture col. no. CGMCC 4.7351 NBRC 112404 AU-G6

NCBI tax ID(s) 1854586

Special Collections Literature strains

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Amycolatopsis antarctica AU-G6 is an aerobe, Gram-positive, rod-shaped bacterium that builds a substrate mycelium and was isolated from surface of an antarctic brown macroalga Adenocystis utricularis.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 393622

NBRC 112404

@ref 20215

Last LPSN update 2026-05-29 08:44:18

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Amycolatopsis

Species Amycolatopsis antarctica

Full scientific name Amycolatopsis antarctica Wang et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
66596	positive	rod-shaped
125439	positive		97.487
125439			94.386

Multicellular morphology

@ref	Forms multicellular complex	Complex name	Complex color	Medium name
66596		substrate mycelium	ivory to beige brown	different ISP agar media

Culture and growth conditions

Culture medium

@ref	Name	Growth
66596	Czapek's agar
66596	ISP 2
66596	ISP 3
66596	ISP 4
66596	ISP 5
66596	ISP 6
66596	ISP 7
66596	modified Bennett's agar
66596	potato-dextrose agar

Culture temp

@ref	Growth	Type	Temperature (°C)
66596	negative	growth	37
66596	positive	optimum	15-20
66596	positive	growth	4-28

Culture pH

@ref	Ability	Type	PH	PH range
66596	positive	optimum	7-8
66596		growth	5
66596		growth	11
66596	positive	growth	6-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
66596	aerobe
125439	facultative anaerobe	95.776

Halophily

@ref	Salt	Growth	Tested relation	Concentration
66596	NaCl	positive	growth	0.5-7.0 %(w/v)
66596	NaCl		growth	10 %(w/v)
66596	NaCl	positive	optimum	3.0-5.0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66596	16411 ChEBI	acetic acid	-	carbon source
66596	16708 ChEBI	adenine	-	hydrolysis
66596	15676 ChEBI	allantoin	+	hydrolysis
66596	18305 ChEBI	arbutin	+	hydrolysis
66596	63317 ChEBI	barium chloride	+	growth
66596	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
66596		casein	+	hydrolysis
66596	17029 ChEBI	chitin	+/-	hydrolysis
66596	53258 ChEBI	citric acid	+	carbon source
66596	35696 ChEBI	cobalt dichloride	-	growth
66596	15824 ChEBI	D-fructose	+	carbon source
66596	12936 ChEBI	D-galactose	+/-	carbon source
66596	17634 ChEBI	D-glucose	+	carbon source
66596	16899 ChEBI	D-mannitol	+	carbon source
66596	16024 ChEBI	D-mannose	+/-	carbon source
66596	17924 ChEBI	D-sorbitol	+	carbon source
66596	65327 ChEBI	D-xylose	+	carbon source
66596	52071 ChEBI	dextran	+	carbon source
66596	23652 ChEBI	dextrin	+/-	carbon source
66596	17113 ChEBI	erythritol	+/-	carbon source
66596	4853 ChEBI	esculin	+/-	carbon source
66596	4853 ChEBI	esculin	+	hydrolysis
66596	16813 ChEBI	galactitol	+	carbon source
66596	5291 ChEBI	gelatin	+	hydrolysis
66596	17754 ChEBI	glycerol	+	carbon source
66596	15428 ChEBI	glycine	+	nitrogen source
66596	16235 ChEBI	guanine	-	hydrolysis
66596	606565 ChEBI	hippurate	+	hydrolysis
66596	24741 ChEBI	hydroxyproline	+	nitrogen source
66596	17368 ChEBI	hypoxanthine	-	hydrolysis
66596	15443 ChEBI	inulin	+	carbon source
66596	24898 ChEBI	isoleucine	+/-	nitrogen source
66596	16977 ChEBI	L-alanine	+	nitrogen source
66596	30849 ChEBI	L-arabinose	+	carbon source
66596	16467 ChEBI	L-arginine	+	nitrogen source
66596	17561 ChEBI	L-cysteine	+	nitrogen source
66596	15971 ChEBI	L-histidine	+	nitrogen source
66596	16643 ChEBI	L-methionine	-	nitrogen source
66596	17295 ChEBI	L-phenylalanine	+	nitrogen source
66596	17203 ChEBI	L-proline	+	nitrogen source
66596	62345 ChEBI	L-rhamnose	+	carbon source
66596	17115 ChEBI	L-serine	+	nitrogen source
66596	16414 ChEBI	L-valine	+	nitrogen source
66596	17716 ChEBI	lactose	+	carbon source
66596	17306 ChEBI	maltose	+	carbon source
66596	6731 ChEBI	melezitose	+/-	carbon source
66596	28053 ChEBI	melibiose	+/-	carbon source
66596	17268 ChEBI	myo-inositol	+	carbon source
66596	17632 ChEBI	nitrate	-	reduction
66596	30623 ChEBI	oxalate	-	carbon source
66596	17309 ChEBI	pectin	-	hydrolysis
66596	75248 ChEBI	potassium tellurite	+/-	growth
66596	16634 ChEBI	raffinose	+/-	carbon source
66596	17814 ChEBI	salicin	+/-	carbon source
66596	278547 ChEBI	sodium azide	-	growth
66596	28017 ChEBI	starch	+	carbon source
66596	28017 ChEBI	starch	-	hydrolysis
66596	30031 ChEBI	succinate	+	carbon source
66596	17992 ChEBI	sucrose	+	carbon source
66596	132950 ChEBI	tartrate	-	carbon source
66596	27082 ChEBI	trehalose	+	carbon source
66596	53424 ChEBI	tween 20	+	hydrolysis
66596	53423 ChEBI	tween 40	+	hydrolysis
66596	53425 ChEBI	tween 60	+	hydrolysis
66596	53426 ChEBI	tween 80	+	hydrolysis
66596	16199 ChEBI	urea	+/-	hydrolysis
66596	15318 ChEBI	xanthine	+/-	hydrolysis
66596	37166 ChEBI	xylan	-	hydrolysis
66596	49976 ChEBI	zinc dichloride	-	growth

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
66596	28669	bacitracin
66596	17698	chloramphenicol	30 µg (disc)
66596	100241	ciprofloxacin
66596	48923	erythromycin	15 µg (disc)
66596	6104	kanamycin
66596	6472	lincomycin
66596	100246	norfloxacin
66596	18208	penicillin g	10 Unit (disc)
66596	28077	rifampicin		5 µg (disc)
66596	17076	streptomycin
66596	29687	teicoplanin	30 µg (disc)
66596	27902	tetracycline	30 µg (disc)
66596	28001	vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
66596	16136 ChEBI	hydrogen sulfide
66596	89634 ChEBI	melanin

Enzymes

@ref	Value	Activity	Ec
66596	acid phosphatase	+	3.1.3.2
66596	alkaline phosphatase	+	3.1.3.1
66596	alpha-chymotrypsin	-	3.4.21.1
66596	alpha-fucosidase	-	3.2.1.51
66596	alpha-galactosidase	-	3.2.1.22
66596	alpha-glucosidase	-	3.2.1.20
66596	alpha-mannosidase	-	3.2.1.24
66596	beta-galactosidase	-	3.2.1.23
66596	beta-glucosidase	-	3.2.1.21
66596	beta-glucuronidase	-	3.2.1.31
66596	catalase	+	1.11.1.6
66596	cystine arylamidase	+	3.4.11.3
66596	cytochrome oxidase	+	1.9.3.1
66596	esterase	+
66596	esterase Lipase (C 8)	+
66596	leucine arylamidase	+	3.4.11.1
66596	lipase	+
66596	N-acetyl-beta-glucosaminidase	+	3.2.1.52
66596	naphthol-AS-BI-phosphohydrolase	+
66596	trypsin	-	3.4.21.4
66596	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

66596

Fatty acid	Percentage
C16:0 iso	42.8
C17:1 w8c	13.5
C15:0 iso	8.1
C17:0	6.6
C16:1 iso H	5.7
C17:1 w6c	3.1
C15:1 w6c	3
C16:0	2.6
C17:0 iso	2.3
C16:1 w7c / C16:1 w6c	2.1
C17:0 10-methyl	2.1
C16:0 10-methyl / iso-C17:1w9c	1.9
C18:0 iso	0.9
C17:0 anteiso	0.9
C18:1 w9c	0.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Algae	#Brown Algae
#Environmental	#Aquatic	#Marine
#Climate	#Cold	#Polar

Isolation

@ref	Sample type	Host species	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture
66596	surface of an antarctic brown macroalga Adenocystis utricularis	Adenocystis utricularis	2014-01-30	Punta Rodriguez Site, King George Island	Antarctica	ATA	Australia and Oceania	-62.1992	-58.9428 -62.1992/-58.9428	ZoBell's marine 2216E medium

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM226287v1 assembly for Amycolatopsis antarctica AU-G6	contig	GCA_002262875	1854586.3	2856677671	1854586	65.11

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66596	Amycolatopsis antarctica strain AU-G6 16S ribosomal RNA gene, partial sequence	KX084450	1421		1854586

GC content

@ref	GC-content (mol%)	Method
66596	70.30	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM226287v1 assembly for Amycolatopsis antarctica AU-G6
NCBI: GCA_002262875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	97.49	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	95.78	no
125439	motility	BacteriaNetⓘ	no	94.39	no
125439	spore_formation	BacteriaNetⓘ	yes	70.70	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amycolatopsis antarctica sp. nov., isolated from the surface of an Antarctic brown macroalga.	Wang J, Leiva S, Huang J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002844	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66596	Jian Wang, Sergio Leiva, Jiao Huang and Ying Huang: Amycolatopsis antarctica sp. nov., isolated from the surface of an Antarctic brown macroalga. IJSEM 68: 2348 - 2356 2018 ( DOI 10.1099/ijsem.0.002844 , PubMed 29869978 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Amycolatopsis antarctica (CGMCC 4.7351, NBRC 112404, AU-G6)

Name and taxonomic classification

Morphology

Cell morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002262875

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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