Name: Actinocorallia populi A251
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159707

Type strain:

Species: Actinocorallia populi

Strain Designation: A251

Culture col. no.: CGMCC 4.7421, JCM 32178

Strain history: Y. Tian; Sichuan Univ., China; A251.

NCBI tax ID(s): 2079200 (species)

Special Collections

Section

Actinocorallia populi A251 is a spore-forming, Gram-positive bacterium that was isolated from root of Populus adenopoda.

Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinocorallia*
	Species	**Actinocorallia populi**
	Full Scientific Name (LPSN)	Actinocorallia populi Li et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66593]	Gram stain	positive

[Ref.: #66593]	Multicellular complex forming ability	yes
[Ref.: #66593]	Multicellular complex further description	actinomycete with well-developed aerial mycelia that differentiate into long straight or flexuous spore chains, spores are ellipsoid in shape

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #66593]			growth	10-45 °C
[Ref.: #67770]			growth	28 °C

	pH	Kind of pH		pH
[Ref.: #66593]			growth	6-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66593]	Spore description	ellipsoid shape
[Ref.: #66593]	Type of spore	spore
[Ref.: #66593]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66593]		NaCl		growth	0-3	%(w/v)

[Ref.: #66593]	Observation	Grows well on most test media and the colour of colonies is media-dependent.
[Ref.: #67770]	Observation	quinones: MK-9(H₄), MK-9(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66593]	cellobiose ChEBI	+	carbon source
[Ref.: #66593]	cellulose ChEBI	-	hydrolysis
[Ref.: #66593]	creatine ChEBI	+	nitrogen source
[Ref.: #66593]	D-fructose ChEBI	-	carbon source
[Ref.: #66593]	D-galactose ChEBI	+	carbon source
[Ref.: #66593]	D-ribose ChEBI	-	carbon source
[Ref.: #66593]	D-sorbitol ChEBI	-	carbon source
[Ref.: #66593]	D-xylose ChEBI	+	carbon source
[Ref.: #66593]	galactitol ChEBI	-	carbon source
[Ref.: #66593]	gelatin ChEBI	+	hydrolysis
[Ref.: #66593]	glucose ChEBI	+	carbon source
[Ref.: #66593]	glycerol ChEBI	-	carbon source
[Ref.: #66593]	glycine ChEBI	-	nitrogen source
[Ref.: #66593]	L-alanine ChEBI	+	nitrogen source
[Ref.: #66593]	L-arabinose ChEBI	+	carbon source
[Ref.: #66593]	L-arginine ChEBI	+	nitrogen source
[Ref.: #66593]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #66593]	L-aspartate ChEBI	+	nitrogen source
[Ref.: #66593]	L-cysteine ChEBI	+	nitrogen source
[Ref.: #66593]	L-histidine ChEBI	+	nitrogen source
[Ref.: #66593]	L-lysine ChEBI	-	nitrogen source
[Ref.: #66593]	L-methionine ChEBI	-	nitrogen source
[Ref.: #66593]	L-phenylalanine ChEBI	+	nitrogen source
[Ref.: #66593]	L-proline ChEBI	+	nitrogen source
[Ref.: #66593]	L-rhamnose ChEBI	+	carbon source
[Ref.: #66593]	L-serine ChEBI	+	nitrogen source
[Ref.: #66593]	L-threonine ChEBI	+	nitrogen source
[Ref.: #66593]	L-tyrosine ChEBI	+	nitrogen source
[Ref.: #66593]	L-valine ChEBI	+	nitrogen source
[Ref.: #66593]	lactose ChEBI	+	carbon source
[Ref.: #66593]	maltose ChEBI	+	carbon source
[Ref.: #66593]	mannitol ChEBI	-	carbon source
[Ref.: #66593]	milk	-	assimilation
[Ref.: #66593]	myo-inositol ChEBI	-	carbon source
[Ref.: #66593]	nitrate ChEBI	+	reduction
[Ref.: #66593]	sodium citrate ChEBI	-	carbon source
[Ref.: #66593]	starch ChEBI	-	carbon source
[Ref.: #66593]	starch ChEBI	-	hydrolysis
[Ref.: #66593]	sucrose ChEBI	+	carbon source
[Ref.: #66593]	tween 20 ChEBI	+	hydrolysis
[Ref.: #66593]	tween 60 ChEBI	-	hydrolysis
[Ref.: #66593]	tween 80 ChEBI	-	hydrolysis
[Ref.: #66593]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #66593]	chloramphenicol ChEBI				yes	30	µg (disc)
[Ref.: #66593]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #66593]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #66593]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #66593]	kanamycin ChEBI	yes	15	µg (disc)
[Ref.: #66593]	norfloxacin ChEBI	yes	10	µg (disc)
[Ref.: #66593]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #66593]	oxacillin ChEBI				yes	1	µg (disc)
[Ref.: #66593]	penicillin ChEBI				yes	10	Unit (disc)
[Ref.: #66593]	piperacillin ChEBI				yes	100	µg (disc)
[Ref.: #66593]	polymyxin b ChEBI	yes	30	µg (disc)
[Ref.: #66593]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #66593]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #66593]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #66593]		hydrogen sulfide ChEBI	no
[Ref.: #66593]		melanin ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #66593]		catalase	+	1.11.1.6
[Ref.: #66593]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66593]	Sample type/isolated from	root of Populus adenopoda
[Ref.: #66593]	Host species	Populus adenopoda
[Ref.: #66593]	Geographic location (country and/or sea, region)	Shuangliu County, Sichuan Province
[Ref.: #66593]	Country	China
[Ref.: #66593]	Country ISO 3 Code	CHN
[Ref.: #66593]	Continent	Asia
[Ref.: #66593]	Enrichment culture	water-yeast extract agar
[Ref.: #66593]	Enrichment culture composition	supplemented with actidione (50 mg l-1) and nalidixic acid (25 mg l-1)
[Ref.: #66593]	Enrichment culture duration	2-6 weeks
[Ref.: #66593]	Enrichment culture temperature	28 ̊C

[Ref.: #67770]	Sample type/isolated from	Root of Populus adenopoda from Shuangliu County
[Ref.: #67770]	Host species	Populus adenopoda
[Ref.: #67770]	Geographic location (country and/or sea, region)	Sichuan Province, south-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Plant	#Root (Rhizome)
#Host	#Plants	#Tree

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66593]	Actinocorallia populi strain A251 16S ribosomal RNA gene, partial sequence	MF100123	1475	GenBank ENA	2079200 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinocorallia populi A251	GCA_002995495	scaffold	GenBank ENA	2079200 tax ID
[Ref.: #66792]	Actinocorallia populi A251	2866127916	draft	JGI IMG/M	2079200 tax ID	*

[Ref.: #66593]

GC-content

71.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinocorallia populi A251 NCBI: GCA_002995495.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

Availability in culture collections External links

[Ref.: #66593]

Culture collection no.

CGMCC 4.7421, JCM 32178

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinocorallia populi sp. nov., an endophytic actinomycete isolated from a root of Populus adenopoda (Maxim.).	Li X, Wang Z, Lu F, Zhang H, Tian J, He L, Chu Y, Tian Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002840	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66593

Xiaoguang Li, Zhikuan Wang, Fengjuan Lu, Heming Zhang, Jiewei Tian, Linling He, Yiwen Chu, Yongqiang Tian: Actinocorallia populi sp. nov., an endophytic actinomycete isolated from a root of Populus adenopoda (Maxim.). IJSEM 68: 2325 - 2330 2018 ( DOI 10.1099/ijsem.0.002840 , PubMed 29851378 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Actinocorallia populi in external resources:
SILVA
BRENDA
PANGAEA
GBIF