Actinocorallia populi (CGMCC 4.7421, JCM 32178, A251)

Name: Actinocorallia populi (CGMCC 4.7421, JCM 32178, A251)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159707

Type strain

Strain Designation A251

Culture col. no. CGMCC 4.7421 JCM 32178 A251

NCBI tax ID(s) 2079200

Special Collections JCM Literature strains

Links

Actinocorallia populi A251 is a spore-forming, Gram-positive prokaryote that was isolated from root of Populus adenopoda.

spore-forming Gram-positive genome sequence 16S sequence

Name and taxonomic classification

SI-ID 131860

JCM 32178

@ref 20215

Last LPSN update 2025-12-16 10:08:19

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinocorallia

Species Actinocorallia populi

Full scientific name Actinocorallia populi Li et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Confidence
66593	positive
125439	positive	100
125439		94.3

Multicellular morphology

@ref	Forms multicellular complex	Further description
66593		actinomycete with well-developed aerial mycelia that differentiate into long straight or flexuous spore chains, spores are ellipsoid in shape

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66593	positive	growth	10-45
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
66593	positive	growth	6-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	98.7

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
66593	ellipsoid shape	spore
125439				96.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
66593	NaCl	positive	growth	0-3 %(w/v)

Observation

@ref	Observation
66593	Grows well on most test media and the colour of colonies is media-dependent.
67770	quinones: MK-9(H₄), MK-9(H₆)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66593	17057 ChEBI	cellobiose	+	carbon source
66593	62968 ChEBI	cellulose	-	hydrolysis
66593	16919 ChEBI	creatine	+	nitrogen source
66593	15824 ChEBI	D-fructose	-	carbon source
66593	12936 ChEBI	D-galactose	+	carbon source
66593	16988 ChEBI	D-ribose	-	carbon source
66593	17924 ChEBI	D-sorbitol	-	carbon source
66593	65327 ChEBI	D-xylose	+	carbon source
66593	16813 ChEBI	galactitol	-	carbon source
66593	5291 ChEBI	gelatin	+	hydrolysis
66593	17234 ChEBI	glucose	+	carbon source
66593	17754 ChEBI	glycerol	-	carbon source
66593	15428 ChEBI	glycine	-	nitrogen source
66593	16977 ChEBI	L-alanine	+	nitrogen source
66593	30849 ChEBI	L-arabinose	+	carbon source
66593	16467 ChEBI	L-arginine	+	nitrogen source
66593	17196 ChEBI	L-asparagine	+	nitrogen source
66593	29991 ChEBI	L-aspartate	+	nitrogen source
66593	17561 ChEBI	L-cysteine	+	nitrogen source
66593	15971 ChEBI	L-histidine	+	nitrogen source
66593	18019 ChEBI	L-lysine	-	nitrogen source
66593	16643 ChEBI	L-methionine	-	nitrogen source
66593	17295 ChEBI	L-phenylalanine	+	nitrogen source
66593	17203 ChEBI	L-proline	+	nitrogen source
66593	62345 ChEBI	L-rhamnose	+	carbon source
66593	17115 ChEBI	L-serine	+	nitrogen source
66593	16857 ChEBI	L-threonine	+	nitrogen source
66593	17895 ChEBI	L-tyrosine	+	nitrogen source
66593	16414 ChEBI	L-valine	+	nitrogen source
66593	17716 ChEBI	lactose	+	carbon source
66593	17306 ChEBI	maltose	+	carbon source
66593	29864 ChEBI	mannitol	-	carbon source
66593		milk	-	assimilation
66593	17268 ChEBI	myo-inositol	-	carbon source
66593	17632 ChEBI	nitrate	+	reduction
66593	53258 ChEBI	sodium citrate	-	carbon source
66593	28017 ChEBI	starch	-	carbon source
66593	28017 ChEBI	starch	-	hydrolysis
66593	17992 ChEBI	sucrose	+	carbon source
66593	53424 ChEBI	tween 20	+	hydrolysis
66593	53425 ChEBI	tween 60	-	hydrolysis
66593	53426 ChEBI	tween 80	-	hydrolysis
66593	16199 ChEBI	urea	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
66593	17698	chloramphenicol	30 µg (disc)
66593	100241	ciprofloxacin		5 µg (disc)
66593	48923	erythromycin		15 µg (disc)
66593	17833	gentamicin		10 µg (disc)
66593	6104	kanamycin		15 µg (disc)
66593	100246	norfloxacin		10 µg (disc)
66593	28368	novobiocin		5 µg (disc)
66593	7809	oxacillin	1 µg (disc)
66593	17334	penicillin	10 Unit (disc)
66593	8232	piperacillin	100 µg (disc)
66593	8309	polymyxin b		30 µg (disc)
66593	17076	streptomycin		10 µg (disc)
66593	27902	tetracycline		30 µg (disc)
66593	28001	vancomycin		30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
66593	16136 ChEBI	hydrogen sulfide
66593	89634 ChEBI	melanin

Enzymes

@ref	Value	Activity	Ec
66593	catalase	+	1.11.1.6
66593	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Plant	#Root (Rhizome)
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
66593	root of Populus adenopoda	Populus adenopoda	Shuangliu County, Sichuan Province	China	CHN	Asia	water-yeast extract agar	supplemented with actidione (50 mg l-1) and nalidixic acid (25 mg l-1)	2-6 weeks	28
67770	Root of Populus adenopoda from Shuangliu County	Populus adenopoda	Sichuan Province, south-west China	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM299549v1 assembly for Actinocorallia populi A251	scaffold	GCA_002995495	2079200.3	2866127916	2079200	69.95

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66593	Actinocorallia populi strain A251 16S ribosomal RNA gene, partial sequence	MF100123	1475		2079200

GC content

@ref	GC-content (mol%)	Method
66593	71.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinocorallia populi A251
NCBI: GCA_002995495

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	96.40	no
125439	motility	BacteriaNetⓘ	no	94.30	no
125439	gram_stain	BacteriaNetⓘ	positive	100.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	98.70	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinocorallia populi sp. nov., an endophytic actinomycete isolated from a root of Populus adenopoda (Maxim.).	Li X, Wang Z, Lu F, Zhang H, Tian J, He L, Chu Y, Tian Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002840	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66593	Xiaoguang Li, Zhikuan Wang, Fengjuan Lu, Heming Zhang, Jiewei Tian, Linling He, Yiwen Chu, Yongqiang Tian: Actinocorallia populi sp. nov., an endophytic actinomycete isolated from a root of Populus adenopoda (Maxim.). IJSEM 68: 2325 - 2330 2018 ( DOI 10.1099/ijsem.0.002840 , PubMed 29851378 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinocorallia populi (CGMCC 4.7421, JCM 32178, A251)

Name and taxonomic classification

Morphology

Cell morphology

Multicellular morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002995495

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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