Name: Raineyella fluvialis CBA3103
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159696

Type strain:

Species: Raineyella fluvialis

Strain Designation: CBA3103

Culture col. no.: DSM 110288, KACC 21446

Strain history: <- S. W. Roh, World Institute of Kimichi;

NCBI tax ID(s): 2662261 (species)

SI-ID 398919

DSM 110288

Special Collections

DSMZ

Section

Raineyella fluvialis CBA3103 is a bacterium that was isolated from Sediment of Geum river.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Propionibacteriaceae*
	Genus	*Raineyella*
	Species	**Raineyella fluvialis**
	Full Scientific Name (LPSN)	Raineyella fluvialis Kim et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %92.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66547]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #66547]

Culture medium growth

[Ref.: #66547]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66547]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66547]			growth	25 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66547]	Sample type/isolated from	Sediment of Geum river
[Ref.: #66547]	Geographic location (country and/or sea, region)	8, Wangdae-gil, Jangsu-eup, Jangsu-gun, Jeollabuk-do
[Ref.: #66547]	Country	Republic of Korea
[Ref.: #66547]	Country ISO 3 Code	KOR
[Ref.: #66547]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MN382297 (>99% sequence identity) for Raineyella from Microbeatlas

Aquatic Samples	43
Soil Samples	4
Animal Samples	26
Plant Samples
Total Samples	73

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66547]	Raineyella fluvialis strain CBA3103 16S ribosomal RNA gene, partial sequence	MN382297	1431	GenBank ENA	1911550 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Raineyella fluvialis CBA3103	GCA_009646095	complete	GenBank ENA	2662261 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Raineyella fluvialis CBA3103 NCBI: GCA_009646095.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	85.893	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	87.1	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	73.849	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	67.619	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.402	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.5	no

Availability in culture collections External links

[Ref.: #66547]

Culture collection no.

DSM 110288, KACC 21446

[Ref.: #112166]

SI-ID 398919

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Raineyella fluvialis sp. nov., an actinobacterium isolated from freshwater sediment.	Kim YB, Kim JY, Song HS, Lee C, Kim J, Whon TW, Lee SH, Rhee JK, Roh SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.004289	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66547

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110288

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#112166

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398919.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Raineyella fluvialis in external resources:
SILVA
BRENDA
PANGAEA
GBIF