Strain identifier
BacDive ID: 159696
Type strain: 
Species: Raineyella fluvialis
Strain Designation: CBA3103
Strain history: <- S. W. Roh, World Institute of Kimichi;
NCBI tax ID(s): 2662261 (species)
version 8.1 (current version)
General
@ref: 66547
BacDive-ID: 159696
DSM-Number: 110288
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Raineyella fluvialis CBA3103 is a mesophilic bacterium that was isolated from Sediment of Geum river.
NCBI tax id
- NCBI tax id: 2662261
- Matching level: species
strain history
- @ref: 66547
- history: <- S. W. Roh, World Institute of Kimichi;
doi: 10.13145/bacdive159696.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Propionibacteriaceae
- genus: Raineyella
- species: Raineyella fluvialis
- full scientific name: Raineyella fluvialis Kim et al. 2020
@ref: 66547
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Propionibacteriales
family: Propionibacteriaceae
genus: Raineyella
species: Raineyella fluvialis
full scientific name: Raineyella fluvialis Kim et al. 2020
strain designation: CBA3103
type strain: yes
Culture and growth conditions
culture medium
- @ref: 66547
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 66547
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66547
- sample type: Sediment of Geum river
- geographic location: 8, Wangdae-gil, Jangsu-eup, Jangsu-gun, Jeollabuk-do
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #River (Creek) |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_21951.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_72;96_11105;97_13448;98_16556;99_21951&stattab=map
- Last taxonomy: Raineyella
- 16S sequence: MN382297
- Sequence Identity:
- Total samples: 73
- soil counts: 4
- aquatic counts: 43
- animal counts: 26
Sequence information
16S sequences
- @ref: 66547
- description: Raineyella sp. strain CBA3103 16S ribosomal RNA gene, partial sequence
- accession: MN382297
- length: 1431
- database: ena
- NCBI tax ID: 1911550
Genome sequences
- @ref: 66792
- description: Raineyella fluvialis CBA3103
- accession: GCA_009646095
- assembly level: complete
- database: ncbi
- NCBI tax ID: 2662261
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.979 | no |
| flagellated | no | 98.514 | no |
| gram-positive | yes | 80.896 | no |
| anaerobic | no | 92.849 | no |
| aerobic | yes | 51.619 | no |
| halophile | no | 95.158 | no |
| spore-forming | no | 92.34 | no |
| glucose-util | yes | 86.857 | no |
| thermophile | no | 95.131 | yes |
| glucose-ferment | no | 70.527 | no |
External links
@ref: 66547
culture collection no.: DSM 110288, KACC 21446
straininfo link
- @ref: 112166
- straininfo: 398919
literature
- topic: Phylogeny
- Pubmed-ID: 32589569
- title: Raineyella fluvialis sp. nov., an actinobacterium isolated from freshwater sediment.
- authors: Kim YB, Kim JY, Song HS, Lee C, Kim J, Whon TW, Lee SH, Rhee JK, Roh SW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004289
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Geologic Sediments, Glycolipids/chemistry, Phospholipids/chemistry, *Phylogeny, Propionibacteriaceae/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rivers/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66547 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-110288 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110288) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 112166 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398919.1 |