Pseudomonas saxonica (DSM 108990, LMG 31235, WS 5092)

Name: Pseudomonas saxonica (DSM 108990, LMG 31235, WS 5092)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159624

Type strain

Strain Designation WS 5092

Culture col. no. DSM 108990 LMG 31235 WS 5092

NCBI tax ID(s) 2600598

Special Collections DSMZ

History DSMZ <- M. Wenning, BFLM, TU Munich, Freising-Weihenstephan, Germany; WS5092 <-

Links

Pseudomonas saxonica WS 5092 is a bacterium that was isolated from skim milk concentrate.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 403678

LMG 31235,DSM 108990

@ref 20215

Last LPSN update 2026-05-29 08:44:14

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas saxonica

Full scientific name Pseudomonas saxonica Hofmann et al. 2020

BacDive ID	Other strains from **Pseudomonas saxonica** (1)	Type strain
159623	P. saxonica WS 5072, DSM 108989, LMG 31234 (type strain)

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	92.645
125438	100	negative
125439	95.738	negative

Multimedia

@ref:	66459
multimedia content:	DSM_108990.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_108990.jpg
caption:	DSM 108990 in DSMZ medium 535 at 28 °C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66459	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
66459	TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)		Medium recipe at MediaDive	Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
66459	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.323

Spore formation

@ref	Spore formation	Confidence
125439		99.944

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Dairy product

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66459	skim milk concentrate	Leppersdorf (48° 38' 48" N, 9° 25' 44.0" E)	Germany	DEU	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM785835v1 assembly for Pseudomonas saxonica DSM 108990	contig	GCA_007858355	2600599.3	8035080065	2600598	48.13

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM785835v1 assembly for Pseudomonas saxonica DSM 108990
BV-BRC: 2600599.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	61.06	no
125439	motility	BacteriaNetⓘ	yes	74.53	no
125439	gram_stain	BacteriaNetⓘ	negative	95.74	no
125439	spore_formation	BacteriaNetⓘ	no	99.94	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas sp. DSM 108990
PATRIC: 2600599.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	98.19	no
125438	spore-forming	spore-formingⓘ	no	87.48	no
125438	aerobic	aerobicⓘ	yes	91.32	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	92.65	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas saxonica sp. nov., isolated from raw milk and skimmed milk concentrate.	Hofmann K, Huptas C, Doll EV, Scherer S, Wenning M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003851	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66459	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108990
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas saxonica (DSM 108990, LMG 31235, WS 5092)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_007858355

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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