Arcobacter aquimarinus (DSM 111014, CECT 8442, LMG 27923)

Name: Arcobacter aquimarinus (DSM 111014, CECT 8442, LMG 27923)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159598

Type strain

Strain Designation W63

Culture col. no. DSM 111014 CECT 8442 LMG 27923 W63 CIP 110984

NCBI tax ID(s) 1315211

Special Collections DSMZ CIP

Links

Arcobacter aquimarinus W63 is a mesophilic, Gram-positive, motile prokaryote that was isolated from water sample .

Gram-positive motile rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 391083

LMG 27923,CECT 8442,DSM 111014,CIP 110984

@ref 20215

Last LPSN update 2025-12-16 10:08:18

Domain Pseudomonadati

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Arcobacteraceae

Genus Arcobacter

Species Arcobacter aquimarinus

Full scientific name Arcobacter aquimarinus Levican et al. 2015

Synonyms (2)

Pseudarcobacter aquimarinus
Pseudoarcobacter aquimarinus

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.1
125438	negative	97.81
116456	positive

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
66424	BHI MEDIUM WITH ADDITIONAL GLUCOSE (DSMZ Medium 215b)	Medium recipe at MediaDive	Name: BHI MEDIUM WITH ADDITIONAL GLUCOSE (DSMZ Medium 215b) Composition: Brain heart infusion 37.0 g/l Glucose 5.0 g/l Distilled water
66424	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
116456	CIP Medium 45	Medium recipe at CIP
116456	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66424	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		91.3
125438		92.417

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68373	16947 ChEBI	citrate	-	assimilation	from API CAM
68373	17634 ChEBI	D-glucose	-	assimilation	from API CAM
68373	606565 ChEBI	hippurate	-	hydrolysis	from API CAM
68373	25115 ChEBI	malate	-	assimilation	from API CAM
68373	17632 ChEBI	nitrate	+	reduction	from API CAM
68373	17272 ChEBI	propionate	+	assimilation	from API CAM
68373	30031 ChEBI	succinate	+	assimilation	from API CAM
68373	78019 ChEBI	triphenyltetrazolium chloride	-	reduction	from API CAM
68373	16199 ChEBI	urea	-	hydrolysis	from API CAM

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.
68373	474053	cefazolin	224 µg	from API CAM
68373	48923	erythromycin		from API CAM
68373	100147	nalidixic acid		from API CAM

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68373	16136 ChEBI	hydrogen sulfide		from API CAM

Enzymes

@ref	Value	Activity	Ec
68373	alkaline phosphatase	+	3.1.3.1	from API CAM
68373	catalase	+	1.11.1.6	from API CAM
68373	esterase	+		from API CAM
68373	gamma-glutamyltransferase	-	2.3.2.2	from API CAM
68373	L-arginine arylamidase	-		from API CAM
68373	L-aspartate arylamidase	-	3.4.11.21	from API CAM
68373	pyrrolidonyl arylamidase	-	3.4.19.3	from API CAM
68373	urease	-	3.5.1.5	from API CAM

API CAM

@ref	URE	Reduction of nitrateNIT	EsteraseEST	HIP	GGT	TTC	PYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	PAL	H2S productionH2S	GLU	SUT	NAL	CFZ	ACE	PROP	MLT	CIT	Erythromycin resistance (+) sensitivity (-)ERO	CAT
66424	-	+	+	-	-	-	-	-	-	+	-	-	+	-	+	+/-	+	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
66424	water sample (Mediterranean Sea; Garraf beach)	Garraf Beach, Sitges (Barcelona)	Spain	ESP	Europe	41.2528	1.9017 41.2528/1.9017
116456	Environment, Mediterranean sea water sample	Mediterranean sea, Garraf beach , Catalonia	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence MG195890 (>99% sequence identity) for Arcobacter from Microbeatlas

Aquatic Samples	9375
Soil Samples	408
Animal Samples	847
Plant Samples	137
Total Samples	10767

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
66424	1	Risk group (German classification)
116456	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1317763v1 assembly for Arcobacter aquimarinus W63	complete	GCA_013177635	1315211.6	1315211	94.58
66792	ASM411579v1 assembly for Arcobacter aquimarinus CECT 8442	contig	GCA_004115795	1315211.5	1315211	62.32

Genome browser: GCA_013177635

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66424	Arcobacter aquimarinus strain CECT8442T 16S ribosomal RNA gene, partial sequence	MG195890	1506		1315211
66424	Arcobacter aquimarinus partial 16S rRNA gene, type strain W63T	HG932574	1402		1315211

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Arcobacter aquimarinus W63
NCBI: GCA_013177635

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	91.30	no
125439	motility	BacteriaNetⓘ	yes	60.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	86.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Arcobacter aquimarinus W63
NCBI: GCA_013177635.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.81	no
125438	anaerobic	anaerobicⓘ	no	54.72	no
125438	aerobic	aerobicⓘ	no	64.54	no
125438	spore-forming	spore-formingⓘ	no	92.42	no
125438	thermophilic	thermophileⓘ	no	89.49	no
125438	flagellated	motile2+ⓘ	yes	78.42	no

Literature

Title	Authors	Journal	DOI	Year
Improved culture enrichment broth for isolation of Arcobacter-like species from the marine environment.	Rahman FU, Andree KB, Salas-Masso N, Fernandez-Tejedor M, Sanjuan A, Figueras MJ, Furones MD.	Sci Rep	10.1038/s41598-020-71442-8	2020
Arcobacter ebronensis sp. nov. and Arcobacter aquimarinus sp. nov., two new species isolated from marine environment.	Levican A, Rubio-Arcos S, Martinez-Murcia A, Collado L, Figueras MJ	Syst Appl Microbiol	10.1016/j.syapm.2014.10.011	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66424	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111014
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68373	Automatically annotated from API CAM .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116456	Collection of Institut Pasteur ; Curators of the CIP; CIP 110984
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Arcobacter aquimarinus (DSM 111014, CECT 8442, LMG 27923)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API CAM

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013177635

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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