Name: Arcobacter aquimarinus W63
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159598

Type strain:

Species: Arcobacter aquimarinus

Strain Designation: W63

Culture col. no.: DSM 111014, CECT 8442, LMG 27923, CIP 110984

Strain history: CIP <- 2015, M.J. Figueras, Rovira I Virgili, Reus Univ., Spain: strain W63

NCBI tax ID(s): 1315211 (species)

SI-ID 391083

LMG 27923, CECT 8442, DSM 111014, CIP 110984

Special Collections

DSMZ
CIP

Section

Arcobacter aquimarinus W63 is a Gram-positive, motile, rod-shaped bacterium that was isolated from water sample .

Gram-positive
motile
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Arcobacteraceae*
	Genus	*Arcobacter*
	Species	**Arcobacter aquimarinus**
	Full Scientific Name (LPSN)	Arcobacter aquimarinus Levican et al. 2015

	Synonym	Pseudarcobacter aquimarinus
	Synonym	Pseudoarcobacter aquimarinus

Information on morphological and physiological properties Morphology

[Ref.: #116456]	Gram stain	positive
[Ref.: #69480]	Gram stain	negative Confidence in %97.81

[Ref.: #116456]	Cell shape	rod-shaped

[Ref.: #116456]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66424]

Culture medium

BHI MEDIUM WITH ADDITIONAL GLUCOSE (DSMZ Medium 215b)

[Ref.: #66424]

Culture medium growth

[Ref.: #66424]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66424]

Culture medium composition

expand / minimize

[Ref.: #66424]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #66424]

Culture medium growth

[Ref.: #66424]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66424]

Culture medium composition

expand / minimize

[Ref.: #116456]

Culture medium

CIP Medium 45

[Ref.: #116456]

Culture medium growth

[Ref.: #116456]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #116456]

Culture medium

CIP Medium 6

[Ref.: #116456]

Culture medium growth

[Ref.: #116456]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #66424]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %92.417
[Ref.: #69481]	Ability of spore formation	no Confidence in %92

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68373]	citrate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	D-glucose ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	hippurate ChEBI	-	hydrolysis	* from API CAM
[Ref.: #68373]	malate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	nitrate ChEBI	+	reduction	* from API CAM
[Ref.: #68373]	propionate ChEBI	+	assimilation	* from API CAM
[Ref.: #68373]	succinate ChEBI	+	assimilation	* from API CAM
[Ref.: #68373]	triphenyltetrazolium chloride ChEBI	-	reduction	* from API CAM
[Ref.: #68373]	urea ChEBI	-	hydrolysis	* from API CAM

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #68373]	cefazolin ChEBI				yes	224	µg	* from API CAM
[Ref.: #68373]	erythromycin ChEBI	yes	14	µg				* from API CAM
[Ref.: #68373]	nalidixic acid ChEBI	yes	84	µg				* from API CAM

	Metabolite production	Metabolite	Production
[Ref.: #68373]		hydrogen sulfide ChEBI	no	* from API CAM

	Enzyme	Enzyme activity	EC number
[Ref.: #68373]	alkaline phosphatase	+	3.1.3.1	* from API CAM
[Ref.: #68373]	catalase	+	1.11.1.6	* from API CAM
[Ref.: #68373]	esterase	+		* from API CAM
[Ref.: #68373]	gamma-glutamyltransferase	-	2.3.2.2	* from API CAM
[Ref.: #68373]	L-arginine arylamidase	-		* from API CAM
[Ref.: #68373]	L-aspartate arylamidase	-	3.4.11.21	* from API CAM
[Ref.: #68373]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API CAM
[Ref.: #68373]	urease	-	3.5.1.5	* from API CAM

API® CAM:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Reduction of nitrateNIT	EsteraseEST	Hippuric acidHIP	gamma-Glutamyl transferaseGGT	Reduction of Triphenyl tetrazolium chlorideTTC	Pyrrolidonyl arylamidasePYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	Alkaline phosphatasePAL	H2S productionH2S	Assimilation of D-glucoseGLU	Assimilation of succinateSUT	Growth inhibitionNAL	Growth inhibitionCFZ	Assimilation of acetateACE	Assimilation of propionic acidPROP	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Erythromycin resistance (+) sensitivity (-)ERO	CatalaseCAT
[Ref.: #66424]	3915	-	+	+	-	-	-	-	-	-	+	-	-	+	-	+	+/-	+	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66424]	Sample type/isolated from	water sample (Mediterranean Sea; Garraf beach)
[Ref.: #66424]	Geographic location (country and/or sea, region)	Garraf Beach, Sitges (Barcelona)
[Ref.: #66424]	Country	Spain
[Ref.: #66424]	Country ISO 3 Code	ESP
[Ref.: #66424]	Continent	Europe
[Ref.: #66424]	Geographic location	41.2528°/1.9017°

[Ref.: #116456]	Sample type/isolated from	Environment, Mediterranean sea water sample
[Ref.: #116456]	Geographic location (country and/or sea, region)	Mediterranean sea, Garraf beach , Catalonia
[Ref.: #116456]	Country	Spain
[Ref.: #116456]	Country ISO 3 Code	ESP
[Ref.: #116456]	Continent	Europe
[Ref.: #116456]	Isolation date	2008-09-01
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MG195890 (>99% sequence identity) for Arcobacter from Microbeatlas

Aquatic Samples	9375
Soil Samples	408
Animal Samples	847
Plant Samples	137
Total Samples	10767

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #66424]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116456]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66424]	Arcobacter aquimarinus strain CECT8442T 16S ribosomal RNA gene, partial sequence	MG195890	1506	GenBank ENA	1315211 tax ID
[Ref.: #66424]	Arcobacter aquimarinus partial 16S rRNA gene, type strain W63T	HG932574	1402	GenBank ENA	1315211 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Arcobacter aquimarinus W63	GCA_013177635	complete	GenBank ENA	1315211 tax ID	*
[Ref.: #66792]	Arcobacter aquimarinus CECT 8442	GCA_004115795	contig	GenBank ENA	1315211 tax ID	*
[Ref.: #66792]	Arcobacter aquimarinus strain CECT 8442	1315211.5	wgs	PATRIC	1315211 tax ID	*
[Ref.: #66792]	Arcobacter aquimarinus CECT 8442	2854852148	draft	JGI IMG/M	1315211 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Arcobacter aquimarinus W63 NCBI: GCA_013177635.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	92	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Arcobacter aquimarinus W63 NCBI: GCA_013177635.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.81	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	54.722	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	64.535	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.417	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	89.49	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	78.417	no

Availability in culture collections External links

[Ref.: #66424]

Culture collection no.

DSM 111014, CECT 8442, LMG 27923, CIP 110984

[Ref.: #112074]

SI-ID 391083

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arcobacter ebronensis sp. nov. and Arcobacter aquimarinus sp. nov., two new species isolated from marine environment.	Levican A, Rubio-Arcos S, Martinez-Murcia A, Collado L, Figueras MJ	Syst Appl Microbiol	10.1016/j.syapm.2014.10.011	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66424

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111014

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68373

Automatically annotated from API CAM .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112074

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID391083.1 )

#116456 Collection of Institut Pasteur ; Curators of the CIP; CIP 110984
* These data were automatically processed and therefore are not curated

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