Strain identifier

BacDive ID: 159598

Type strain: Yes

Species: Arcobacter aquimarinus

Strain Designation: W63

Strain history: CIP <- 2015, M.J. Figueras, Rovira I Virgili, Reus Univ., Spain: strain W63

NCBI tax ID(s): 1315211 (species)

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General

@ref: 66424

BacDive-ID: 159598

DSM-Number: 111014

keywords: genome sequence, 16S sequence, Bacteria, Gram-positive, motile, rod-shaped

description: Arcobacter aquimarinus W63 is a Gram-positive, motile, rod-shaped bacterium that was isolated from water sample .

NCBI tax id

  • NCBI tax id: 1315211
  • Matching level: species

strain history

@refhistory
66424<- CECT; CECT8442 <- M. J. Figueras, Rovira i Virgili University, Reus, Spain; <- L. Collado; W63
116456CIP <- 2015, M.J. Figueras, Rovira I Virgili, Reus Univ., Spain: strain W63

doi: 10.13145/bacdive159598.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Arcobacteraceae
  • genus: Arcobacter
  • species: Arcobacter aquimarinus
  • full scientific name: Arcobacter aquimarinus Levican et al. 2015

  • synonyms

    @refsynonym
    20215Pseudarcobacter aquimarinus
    20215Pseudoarcobacter aquimarinus

@ref: 66424

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Arcobacteraceae

genus: Arcobacter

species: Arcobacter aquimarinus

full scientific name: Arcobacter aquimarinus Levican et al. 2015

strain designation: W63

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative97.81
116456positiverod-shapedyes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
66424BHI MEDIUM WITH ADDITIONAL GLUCOSE (DSMZ Medium 215b)yeshttps://mediadive.dsmz.de/medium/215bName: BHI MEDIUM WITH ADDITIONAL GLUCOSE (DSMZ Medium 215b) Composition: Brain heart infusion 37.0 g/l Glucose 5.0 g/l Distilled water
66424COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
116456CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45
116456CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

  • @ref: 66424
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no92.417
69481no92

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316199urea-hydrolysis
6837317632nitrate+reduction
68373606565hippurate-hydrolysis
6837378019triphenyltetrazolium chloride-reduction
6837317634D-glucose-assimilation
6837330031succinate+assimilation
6837317272propionate+assimilation
6837325115malate-assimilation
6837316947citrate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

  • @ref: 68373
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
68373catalase+1.11.1.6
68373alkaline phosphatase+3.1.3.1
68373L-aspartate arylamidase-3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase-2.3.2.2
68373esterase+
68373urease-3.5.1.5

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
66424-++------+--+-++/-+---+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeisolation date
66424water sample (Mediterranean Sea; Garraf beach)Garraf Beach, Sitges (Barcelona)SpainESPEurope41.25281.9017
116456Environment, Mediterranean sea water sampleMediterranean sea, Garraf beach , CataloniaSpainESPEurope2008-09-01

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_1626.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_53;96_923;97_1075;98_1284;99_1626&stattab=map
  • Last taxonomy: Arcobacter
  • 16S sequence: MG195890
  • Sequence Identity:
  • Total samples: 10767
  • soil counts: 408
  • aquatic counts: 9375
  • animal counts: 847
  • plant counts: 137

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
664241Risk group (German classification)
1164561Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
66424Arcobacter aquimarinus strain CECT8442T 16S ribosomal RNA gene, partial sequenceMG1958901506nuccore1315211
66424Arcobacter aquimarinus partial 16S rRNA gene, type strain W63THG9325741402nuccore1315211

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Arcobacter aquimarinus W63GCA_013177635completencbi1315211
66792Arcobacter aquimarinus CECT 8442GCA_004115795contigncbi1315211
66792Arcobacter aquimarinus strain CECT 84421315211.5wgspatric1315211
66792Arcobacter aquimarinus CECT 84422854852148draftimg1315211

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno92no
69480gram-positivegram-positivePositive reaction to Gram-stainingno97.81no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no54.722no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no64.535no
69480spore-formingspore-formingAbility to form endo- or exosporesno92.417no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno89.49no
69480flagellatedmotile2+Ability to perform flagellated movementyes78.417no

External links

@ref: 66424

culture collection no.: DSM 111014, CECT 8442, LMG 27923, CIP 110984

straininfo link

  • @ref: 112074
  • straininfo: 391083

literature

  • topic: Phylogeny
  • Pubmed-ID: 25497285
  • title: Arcobacter ebronensis sp. nov. and Arcobacter aquimarinus sp. nov., two new species isolated from marine environment.
  • authors: Levican A, Rubio-Arcos S, Martinez-Murcia A, Collado L, Figueras MJ
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2014.10.011
  • year: 2014
  • mesh: Arcobacter/*isolation & purification, DNA, Bacterial/genetics, Molecular Sequence Data, Molecular Typing, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, *Water Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66424Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-111014Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 111014)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68373Automatically annotated from API CAM
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
112074Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID391083.1
116456Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110984Collection of Institut Pasteur (CIP 110984)