Name: Pseudomonas carnis B4-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159514

Type strain:

Species: Pseudomonas carnis

Strain Designation: B4-1

Culture col. no.: DSM 107652, LMG 30892

Strain history: <- L. Kroeckel, Max Rubner Institut, Federal Research Institute of Nutrition and Food, Department of Microbiology and Biotechnology; B4-1 <- A. Bantleon and L. Kroeckel

NCBI tax ID(s): 2487355 (species)

SI-ID 407536

DSM 107652

Other strains from Pseudomonas carnis

P. carnis SpeckC, DSM 107651, LMG 30893

Section

Pseudomonas carnis B4-1 is a mesophilic bacterium that was isolated from poultry meat cuts .

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas carnis**
	Full Scientific Name (LPSN)	Pseudomonas carnis Lick et al. 2020

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66339]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #66339]

Culture medium growth

[Ref.: #66339]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66339]

Culture medium composition

expand / minimize

[Ref.: #66339]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #66339]

Culture medium growth

[Ref.: #66339]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66339]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66339]			growth	25 °C

[Ref.: #66339]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #66339]	24736	-	-	-	+	-	+	+	-	+	+	+	+	+	-	+	+	-	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66339]	Sample type/isolated from	poultry meat cuts (raw material for processed meat products)
[Ref.: #66339]	Geographic location (country and/or sea, region)	Versmold, NRW
[Ref.: #66339]	Country	Germany
[Ref.: #66339]	Country ISO 3 Code	DEU
[Ref.: #66339]	Continent	Europe
[Ref.: #66339]	Geographic location	52.1678°/8.2739°
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Meat
#Host	#Birds	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas carnis B4-1	2897202802	draft	JGI IMG/M	2487355 tax ID	*

[Ref.: #66339]

GC-content

59.8 mol%

sequence analysis

Availability in culture collections External links

[Ref.: #66339]

Culture collection no.

DSM 107652, LMG 30892

[Ref.: #111997]

SI-ID 407536

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas paracarnis sp. nov., isolated from refrigerated beef.	Lick S, Wibberg D, Winkler A, Blom J, Grimmler C, Goesmann A, Kalinowski J, Krockel L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004652	2021	*
Phylogeny	Pseudomonas carnis sp. nov., isolated from meat.	Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Bantleon A, Goesmann A, Kalinowski J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003928	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66339

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107652

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#111997

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407536.1 )

* These data were automatically processed and therefore are not curated

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