Name: Caproicibacter fermentans EA1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159492

Type strain:

Species: Caproicibacter fermentans

Strain Designation: EA1

Culture col. no.: DSM 107079, JCM 33110

Strain history: F. R. Bengelsdorf; Ulm Univ., Germany; EA1.

NCBI tax ID(s): 2576756 (species)

SI-ID 399283

DSM 107079

Section

Caproicibacter fermentans EA1 is a mesophilic bacterium that was isolated from Anaerobic caproate enrichment culture treated with sodium 2-bromoethanesulfonate and inoculated with a biogas disputer sample.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Caproicibacter*
	Species	**Caproicibacter fermentans**
	Full Scientific Name (LPSN)	Caproicibacter fermentans Flaiz et al. 2020

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66315]

Culture medium

FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)

[Ref.: #66315]

Culture medium growth

[Ref.: #66315]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66315]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66315]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #66315]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66315]	Sample type/isolated from	Anaerobic caproate enrichment culture treated with sodium 2-bromoethanesulfonate and inoculated with a biogas disputer sample
[Ref.: #66315]	Geographic location (country and/or sea, region)	Ulm
[Ref.: #66315]	Country	Germany
[Ref.: #66315]	Country ISO 3 Code	DEU
[Ref.: #66315]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Biogas reactor content from a biogas plant in Ströbele-Beck GbR
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ulm
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MN851263 (>99% sequence identity) for Caproiciproducens from Microbeatlas

Aquatic Samples	408
Soil Samples	214
Animal Samples	9168
Plant Samples	56
Total Samples	9846

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66315]	Caprobacter fermentans strain EA1 16S ribosomal RNA gene, partial sequence	MN851263	1524	ENA	2576756 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Caproicibacter fermentans EA1	GCA_009746625	contig	GenBank	2576756 tax ID
[Ref.: #66792]	Caprobacter fermentans strain EA1	2576756.3	wgs	PATRIC	2576756 tax ID	*
[Ref.: #66792]	Caproicibacter fermentans EA1	2886878113	draft	JGI IMG/M	2576756 tax ID	*

[Ref.: #66315]	GC-content	51.3 mol%	sequence analysis
[Ref.: #67770]	GC-content	51.25 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caprobacter fermentans strain EA1 PATRIC: 2576756.3
[Ref.: #69480]	motile	yes	84.638	no
[Ref.: #69480]	gram-positive	yes	70.968	no
[Ref.: #69480]	anaerobic	yes	99.326	no
[Ref.: #69480]	aerobic	no	98.736	no
[Ref.: #69480]	halophile	no	95.03	no
[Ref.: #69480]	spore-forming	yes	71.341	no
[Ref.: #69480]	glucose-util	yes	87.8	no
[Ref.: #69480]	flagellated	no	61.506	no
[Ref.: #69480]	thermophile	no	92.808	no
[Ref.: #69480]	glucose-ferment	yes	62.756	no

Availability in culture collections External links

[Ref.: #66315]

Culture collection no.

DSM 107079, JCM 33110

[Ref.: #111981]

SI-ID 399283

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caproicibacter fermentans gen. nov., sp. nov., a new caproate-producing bacterium and emended description of the genus Caproiciproducens.	Flaiz M, Baur T, Brahner S, Poehlein A, Daniel R, Bengelsdorf FR	Int J Syst Evol Microbiol	10.1099/ijsem.0.004283	2020	*
Phylogeny	Caproicibacterium amylolyticum gen. nov., sp. nov., a novel member of the family Oscillospiraceae isolated from pit clay used for making Chinese strong aroma-type liquor.	Gu Y, Zhu X, Lin F, Shen C, Li Y, Ao L, Fan W, Ren C, Xu Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004789	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66315

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107079

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111981

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399283.1 )

* These data were automatically processed and therefore are not curated

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Caprobacter fermentans strain EA1

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