Name: Ramlibacter aquaticus DSM 110366
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159427

Type strain:

Species: Ramlibacter aquaticus

Culture col. no.: DSM 110366, LMG 30558

NCBI tax ID(s): 2780094 (species)

SI-ID 400745

DSM 110366

Special Collections

DSMZ

Section

Ramlibacter aquaticus DSM 110366 is a Gram-negative bacterium that was isolated from Secondary cooling water of nuclear reactor.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Ramlibacter*
	Species	**Ramlibacter aquaticus**
	Full Scientific Name (LPSN)	Ramlibacter aquaticus Props et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.479

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66250]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #66250]

Culture medium growth

[Ref.: #66250]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66250]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66250]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66250]	Sample type/isolated from	Secondary cooling water of nuclear reactor
[Ref.: #66250]	Geographic location (country and/or sea, region)	Mol, Antwerp (51° 13' 11.9'' N, 05° 05' 23.9' 'E)
[Ref.: #66250]	Country	Belgium
[Ref.: #66250]	Country ISO 3 Code	BEL
[Ref.: #66250]	Continent	Europe
[Ref.: #66250]	Geographic location	51.2200°/5.0900°
* marker position based on {}

Isolation sources categories

#Engineered

#Industrial

#Cooling tower

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ramlibacter aquaticus LMG 30558	GCA_015159745	contig	GenBank ENA	2780094 tax ID	*
[Ref.: #66792]	Ramlibacter aquaticus strain LMG 30558	2780094.3	wgs	PATRIC	2780094 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ramlibacter aquaticus strain LMG 30558 PATRIC: 2780094.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ramlibacter aquaticus strain LMG 30558 PATRIC: 2780094.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.479	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.149	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.79	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.619	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.251	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	85.915	no

Availability in culture collections External links

[Ref.: #66250]

Culture collection no.

DSM 110366, LMG 30558

[Ref.: #111921]

SI-ID 400745

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Gene Expansion and Positive Selection as Bacterial Adaptations to Oligotrophic Conditions.	Props R, Monsieurs P, Vandamme P, Leys N, Denef VJ, Boon N	mSphere	10.1128/mSphereDirect.00011-19	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66250

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110366

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111921

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400745.1 )

* These data were automatically processed and therefore are not curated

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Ramlibacter aquaticus strain LMG 30558

Ramlibacter aquaticus strain LMG 30558

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