Name: Lactiplantibacillus garii FI11369
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159428

Type strain:

Species: Lactiplantibacillus garii

Strain Designation: FI11369, QI11369

Culture col. no.: DSM 108249, NCIMB 15148

Strain history: <- M. Diaz, Quadram Institute Bioscience, Food Innovation and Health; FI11369

NCBI tax ID(s): 2306423 (species)

SI-ID 404938

DSM 108249

Section

Lactiplantibacillus garii FI11369 is a mesophilic bacterium that was isolated from Gari: fermented cassava produced by spontaneous fermentation.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactiplantibacillus*
	Species	**Lactiplantibacillus garii**
	Full Scientific Name (LPSN)	Lactiplantibacillus garii Zheng et al. 2020

	Synonym	Lactobacillus garii
	Synonym	Lactiplantibacillus garii

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %98.578

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66251]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #66251]

Culture medium growth

[Ref.: #66251]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66251]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66251]			growth	30 °C

[Ref.: #66251]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66251]	Sample type/isolated from	Gari: fermented cassava produced by spontaneous fermentation
[Ref.: #66251]	Host species	Cassava
[Ref.: #66251]	Geographic location (country and/or sea, region)	Pokoasi, Accra
[Ref.: #66251]	Country	Ghana
[Ref.: #66251]	Country ISO 3 Code	GHA
[Ref.: #66251]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Shrub (Scrub)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66251]	Lactobacillus garii 16S ribosomal RNA gene, partial sequence	MN817919	1438	ENA	2306423 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lactiplantibacillus garii FI11369	GCA_003885105	scaffold	GenBank	2306423 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactiplantibacillus garii FI11369 NCBI: GCA_003885105.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactiplantibacillus garii FI11369 NCBI: GCA_003885105.1
[Ref.: #69480]	flagellated	no	97.277	no
[Ref.: #69480]	gram-positive	yes	95.928	no
[Ref.: #69480]	anaerobic	no	89.894	no
[Ref.: #69480]	aerobic	no	97.992	no
[Ref.: #69480]	halophile	yes	83.779	no
[Ref.: #69480]	spore-forming	no	93.649	no
[Ref.: #69480]	thermophile	no	99.688	no
[Ref.: #69480]	glucose-util	yes	92.73	no
[Ref.: #69480]	motile	no	95.053	no
[Ref.: #69480]	glucose-ferment	yes	82.567	no

Availability in culture collections External links

[Ref.: #66251]

Culture collection no.

DSM 108249, NCIMB 15148

[Ref.: #111922]

SI-ID 404938

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus garii sp. nov., isolated from a fermented cassava product.	Diaz M, Sayavedra L, Atter A, Mayer MJ, Saha S, Amoa-Awua W, Narbad A	Int J Syst Evol Microbiol	10.1099/ijsem.0.004121	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66251

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108249

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111922

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404938.1 )

* These data were automatically processed and therefore are not curated

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