Lactiplantibacillus garii (DSM 108249, NCIMB 15148, FI11369)

Name: Lactiplantibacillus garii (DSM 108249, NCIMB 15148, FI11369)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159428

Type strain

Strain Designation FI11369, QI11369

Culture col. no. DSM 108249 NCIMB 15148 FI11369 QI11369

NCBI tax ID(s) 2306423

Special Collections DSMZ

History <- M. Diaz, Quadram Institute Bioscience, Food Innovation and Health; FI11369

Links

Lactiplantibacillus garii FI11369 is a bacterium that was isolated from Gari: fermented cassava produced by spontaneous fermentation.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404938

NCIMB 15148,DSM 108249

@ref 20215

Last LPSN update 2026-02-09 11:38:37

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lactiplantibacillus

Species Lactiplantibacillus garii

Full scientific name Lactiplantibacillus garii Zheng et al. 2020

Synonyms (2)

Lactiplantibacillus garii
Lactobacillus garii

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	93.016

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66251	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
66251	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	microaerophile	93.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Shrub (Scrub)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
66251	Gari: fermented cassava produced by spontaneous fermentation	Cassava	Pokoasi, Accra	Ghana	GHA	Africa

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM388510v1 assembly for Lactiplantibacillus garii FI11369	scaffold	GCA_003885105	2306423.3	2881633906	2306423	44.89

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66251	Lactiplantibacillus garii 16S ribosomal RNA gene, partial sequence	MN817919	1438		2306423

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lactiplantibacillus garii FI11369
NCBI: GCA_003885105

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	62.90	no
125439	motility	BacteriaNetⓘ	no	61.50	no
125439	gram_stain	BacteriaNetⓘ	positive	71.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	93.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactiplantibacillus garii FI11369
NCBI: GCA_003885105.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.02	no
125438	anaerobic	anaerobicⓘ	no	88.22	no
125438	aerobic	aerobicⓘ	no	96.87	no
125438	spore-forming	spore-formingⓘ	no	82.14	no
125438	thermophilic	thermophileⓘ	no	97.00	no
125438	flagellated	motile2+ⓘ	no	86.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus garii sp. nov., isolated from a fermented cassava product.	Diaz M, Sayavedra L, Atter A, Mayer MJ, Saha S, Amoa-Awua W, Narbad A	Int J Syst Evol Microbiol	10.1099/ijsem.0.004121	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66251	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108249
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lactiplantibacillus garii (DSM 108249, NCIMB 15148, FI11369)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003885105

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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