Name: Actinomyces qiguomingii 410
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159350

Type strain:

Species: Actinomyces qiguomingii

Strain Designation: 410

Culture col. no.: DSM 106201, CGMCC 1.16361

Strain history: <- W. Zhu, CDC China, State Key Laboratory of Infections Disease Prevention and Control, Beijing, China; 410

NCBI tax ID(s): 2057800 (species)

SI-ID 398038

DSM 106201

Section

Actinomyces qiguomingii 410 is an anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from feces of Tibetan antelope.

colony-forming
Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Actinomycetales*
	Family	*Actinomycetaceae*
	Genus	*Actinomyces*
	Species	**Actinomyces qiguomingii**
	Full Scientific Name (LPSN)	Actinomyces qiguomingii Zhu et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69491]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69491]	Cell length	2.1-2.8 µm

[Ref.: #69491]	Cell width	0.3-0.5 µm

[Ref.: #69491]	Cell shape	rod-shaped

[Ref.: #69491]	Motility	no

[Ref.: #69491]	Colony size	1 mm
[Ref.: #69491]	Colony color	milky white
[Ref.: #69491]	Colony shape	circular
[Ref.: #69491]	Incubation period	3 days
[Ref.: #69491]	Cultivation medium used	BHI-sheep blood agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

[Ref.: #69491]

Culture medium

BHI-sheep blood agar

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Culture medium growth

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Culture medium

BHI-sheep blood agar plates

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Culture medium growth

		Temperature
[Ref.: #66173]	growth	37 °C
[Ref.: #69491]	growth	28.0-42.0 °C
[Ref.: #69491]	optimum	37 °C

[Ref.: #66173]	Temperature range	mesophilic
[Ref.: #69491]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #69491]			optimum	7
[Ref.: #69491]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69491]	Oxygen tolerance	facultative anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %97.719

[Ref.: #69491]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69491]		NaCl		growth	0.0-3.0	%(w/v)
[Ref.: #69491]		NaCl		optimum	1	%(w/v)

[Ref.: #69491]	Observation	The major polar lipids are diphosphatidylglycerol and phosphatidylinositol-mannoside.
[Ref.: #69491]	Observation	The main quinones are MK-10 and MK-9.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69491]	amygdalin ChEBI	+	builds acid from
[Ref.: #69491]	arbutin ChEBI	+	builds acid from
[Ref.: #69491]	cellobiose ChEBI	+	builds acid from
[Ref.: #69491]	D-arabinose ChEBI	+	builds acid from
[Ref.: #69491]	D-fructose ChEBI	+	builds acid from
[Ref.: #69491]	D-galactose ChEBI	+	builds acid from
[Ref.: #69491]	D-glucose ChEBI	+	builds acid from
[Ref.: #69491]	D-lyxose ChEBI	+	builds acid from
[Ref.: #69491]	D-mannitol ChEBI	+	builds acid from
[Ref.: #69491]	D-mannose ChEBI	+	builds acid from
[Ref.: #69491]	D-ribose ChEBI	+	builds acid from
[Ref.: #69491]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #69491]	D-xylose ChEBI	+	builds acid from
[Ref.: #69491]	esculin ChEBI	+	builds acid from
[Ref.: #69491]	gentiobiose ChEBI	+	builds acid from
[Ref.: #69491]	glucose ChEBI	+	fermentation
[Ref.: #69491]	glycerol ChEBI	+	builds acid from
[Ref.: #69491]	glycogen ChEBI	+	builds acid from
[Ref.: #69491]	inulin ChEBI	+	builds acid from
[Ref.: #69491]	L-arabinose ChEBI	+	builds acid from
[Ref.: #69491]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #69491]	L-sorbose ChEBI	+	builds acid from
[Ref.: #69491]	lactose ChEBI	+	builds acid from
[Ref.: #69491]	maltose ChEBI	+	builds acid from
[Ref.: #69491]	melezitose ChEBI	+	builds acid from
[Ref.: #69491]	melibiose ChEBI	+	builds acid from
[Ref.: #69491]	myo-inositol ChEBI	+	builds acid from
[Ref.: #69491]	nitrate ChEBI	+	reduction
[Ref.: #69491]	potassium gluconate ChEBI	+	builds acid from
[Ref.: #69491]	raffinose ChEBI	+	builds acid from
[Ref.: #69491]	salicin ChEBI	+	builds acid from
[Ref.: #69491]	starch ChEBI	+	builds acid from
[Ref.: #69491]	sucrose ChEBI	+	builds acid from
[Ref.: #69491]	trehalose ChEBI	+	builds acid from
[Ref.: #69491]	turanose ChEBI	+	builds acid from
[Ref.: #69491]	xylitol ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #69491]	ethanol ChEBI	yes
[Ref.: #69491]	indole ChEBI	no
[Ref.: #69491]	lactate ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #69491]	acid phosphatase	+	3.1.3.2
[Ref.: #69491]	alkaline phosphatase	+	3.1.3.1
[Ref.: #69491]	alpha-glucosidase	+	3.2.1.20
[Ref.: #69491]	arginine arylamidase	+
[Ref.: #69491]	beta-galactosidase	+	3.2.1.23
[Ref.: #69491]	beta-glucosidase	+	3.2.1.21
[Ref.: #69491]	catalase	-	1.11.1.6
[Ref.: #69491]	cytochrome oxidase	-	1.9.3.1
[Ref.: #69491]	glycin arylamidase	+
[Ref.: #69491]	histidine arylamidase	+
[Ref.: #69491]	leucine arylamidase	+	3.4.11.1
[Ref.: #69491]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #69491]	phenylalanine arylamidase	+
[Ref.: #69491]	proline-arylamidase	+	3.4.11.5
[Ref.: #69491]	tyrosine arylamidase	+
[Ref.: #69491]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66173]	Sample type/isolated from	feces of Tibetan antelope
[Ref.: #66173]	Geographic location (country and/or sea, region)	Kekexii, Qinghai Province
[Ref.: #66173]	Country	China
[Ref.: #66173]	Country ISO 3 Code	CHN
[Ref.: #66173]	Continent	Asia

[Ref.: #69491]	Sample type/isolated from	faecal sample pooled from two different Pantholops hodgsonii
[Ref.: #69491]	Geographic location (country and/or sea, region)	Qinghai
[Ref.: #69491]	Country	China
[Ref.: #69491]	Country ISO 3 Code	CHN
[Ref.: #69491]	Continent	Asia
[Ref.: #69491]	Geographic location	35.9833°/94.0500°
[Ref.: #69491]	Enrichment culture	BHI sheep blood agar plates
[Ref.: #69491]	Enrichment culture duration	5 days
[Ref.: #69491]	Enrichment culture temperature	37 ̊C
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66173]	Actinomyces sp. strain 410 16S ribosomal RNA gene, partial sequence	MG650117	1530	ENA	2057800 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #69491]	genome sequence	CP025228		GenBank	2057800 tax ID
[Ref.: #66792]	Actinomyces qiguomingii actinomyces sp. 410	GCA_004102025	complete	GenBank	2057800 tax ID	*
[Ref.: #66792]	Actinomyces qiguomingii 410	2867002583	complete	JGI IMG/M	2057800 tax ID	*

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GC-content

67.4 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinomyces qiguomingii 410 NCBI: GCA_004102025.1
[Ref.: #69481]	spore-forming	yes	55	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinomyces qiguomingii 410 NCBI: GCA_004102025.1
[Ref.: #69480]	motile	no	92.116	no
[Ref.: #69480]	flagellated	no	97.441	no
[Ref.: #69480]	gram-positive	yes	95.973	no
[Ref.: #69480]	anaerobic	no	62.779	no
[Ref.: #69480]	aerobic	no	93.158	no
[Ref.: #69480]	halophile	no	86.544	no
[Ref.: #69480]	spore-forming	no	89.236	no
[Ref.: #69480]	glucose-util	yes	89.671	no
[Ref.: #69480]	thermophile	no	94.63	no
[Ref.: #69480]	glucose-ferment	yes	76.881	no

Availability in culture collections External links

[Ref.: #66173]

Culture collection no.

DSM 106201, CGMCC 1.16361

[Ref.: #111848]

SI-ID 398038

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomyces qiguomingii sp. nov., isolated from the Pantholops hodgsonii.	Zhu W, Yang J, Lu S, Lai XH, Jin D, Wang X, Pu J, Ren Z, Huang Y, Wu X, Zhang X, Xu J, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003709	2020	*
Phylogeny	Actinomyces ruminis sp. nov., an obligately anaerobic bacterium isolated from the rumen of cattle.	Lanjekar VB, Hivarkar SS, Vasudevan G, Joshi A, Dhakephalkar PK, Dagar SS	Arch Microbiol	10.1007/s00203-022-03339-1	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66173

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106201

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69491

Shao-Wei Liu, Chun-Mei Xue, Fei-Na Li, Cheng-Hang Sun: Actinomyces qiguomingii sp. nov., isolated from the Pantholops hodgsonii. IJSEM 70: 2019 ( DOI 10.1099/ijsem.0.003709 )

#111848

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398038.1 )

* These data were automatically processed and therefore are not curated

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