Name: Scrofimicrobium canadense WB03_NA08
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159351

Type strain:

Species: Scrofimicrobium canadense

Strain Designation: WB03_NA08

Culture col. no.: DSM 105338, JCM 34392

Strain history: B. Abt; DSMZ, Germany; DSM 105338 (=WB03_NA08) <-- E. Allen-Vercoe; Univ. of Guelph, Canada.

NCBI tax ID(s): 2652290 (species)

SI-ID 397303

DSM 105338

Section

Scrofimicrobium canadense WB03_NA08 is an anaerobe, mesophilic bacterium that was isolated from wild boar.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Actinomycetales*
	Family	*Actinomycetaceae*
	Genus	*Scrofimicrobium*
	Species	**Scrofimicrobium canadense**
	Full Scientific Name (LPSN)	Scrofimicrobium canadense Wylensek et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69645]	Gram stain	positive
[Ref.: #69645]	Cell length	1-2 µm
[Ref.: #69645]	Cell shape	rod-shaped

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %90.133

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66174]

Culture medium

WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)

[Ref.: #66174]

Culture medium growth

[Ref.: #66174]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66174]

Culture medium composition

expand / minimize

[Ref.: #69645]

Culture medium

Nutrient agar (NA)

[Ref.: #69645]

Culture medium growth

[Ref.: #69645]

Culture medium

Wilkins-Chalgren Anaerobe broth

[Ref.: #69645]

Culture medium growth

[Ref.: #69645]

Culture medium composition

expand / minimize

[Ref.: #69645]

Culture medium

modified YCFA

[Ref.: #69645]

Culture medium growth

		Temperature
[Ref.: #66174]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #69645]	growth	37 °C

[Ref.: #66174]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #69645]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69645]	Oxygen tolerance	facultative anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %94.818

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68367]	cellobiose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-glucose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-mannitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-mannose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-xylose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	gelatin ChEBI	-	hydrolysis	* from API 20A
[Ref.: #69645]	glucose ChEBI	+	assimilation
[Ref.: #68367]	glycerol ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	L-arabinose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	L-rhamnose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	lactose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	maltose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	melezitose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	raffinose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	salicin ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sorbitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	trehalose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	tryptophan ChEBI	-	energy source	* from API 20A
[Ref.: #68367]	urea ChEBI	-	hydrolysis	* from API 20A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #69645]	acetate ChEBI	yes
[Ref.: #69645]	formate ChEBI	yes
[Ref.: #69645]	lactate ChEBI	yes
[Ref.: #69645]	succinate ChEBI	yes
[Ref.: #68367]	indole ChEBI	no	* from API 20A

	Physiological tests	Metabolite	Indole test
[Ref.: #68367]		indole ChEBI	-	* from API 20A

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68367]		gelatinase	-		* from API 20A
[Ref.: #68367]		urease	-	3.5.1.5	* from API 20A

API® 20A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Indole productionIND	Urease/urea hydrolysisURE	Acid from D-glucoseGLU	Acid from D-mannitolMAN	Acid from lactoseLAC	Acid from sucroseSAC	Acid from maltoseMAL	Acid from salicinSAL	Acid from D-xyloseXYL	Acid from L-arabinoseARA	Gelatinase/gelatin hydrolysisGEL	Esculin hydrolysis/beta-glucosidaseESC	Acid from glycerolGLY	Acid from cellobioseCEL	Acid from D-mannoseMNE	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from sorbitolSOR	Acid from L-rhamnoseRHA	Acid from trehaloseTRE	CatalaseCAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
[Ref.: #66174]	2166	-	-	+	-	-	+/-	+	-	+	+	-	+/-	+	+	+	+	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66174]	Sample type/isolated from	wild boar
[Ref.: #66174]	Geographic location (country and/or sea, region)	Stratford, Ontario
[Ref.: #66174]	Country	Canada
[Ref.: #66174]	Country ISO 3 Code	CAN
[Ref.: #66174]	Continent	North America
[Ref.: #66174]	Geographic location	43.3667°/-80.9833°

[Ref.: #67770]	Sample type/isolated from	Feces of a farmed wild boar in Moserville
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ontario
[Ref.: #67770]	Country	Canada
[Ref.: #67770]	Country ISO 3 Code	CAN
[Ref.: #67770]	Continent	North America

[Ref.: #69645]	Sample type/isolated from	Wild boar feces
[Ref.: #69645]	Geographic location (country and/or sea, region)	Moserville, Ontario
[Ref.: #69645]	Country	Canada
[Ref.: #69645]	Country ISO 3 Code	CAN
[Ref.: #69645]	Continent	North America
[Ref.: #69645]	Enrichment culture	Nutrient Agar
[Ref.: #69645]	Enrichment culture duration	3-4 days
[Ref.: #69645]	Enrichment culture temperature	37 ̊C
[Ref.: #69645]	Isolation/enrichment procedure	aerobic
* marker position based on {}

Isolation sources categories

#Host

#Mammals

#Suidae (Pig,Swine)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66174]	Actinomycetaceae bacterium DSM 105338 16S ribosomal RNA gene, partial sequence	MN537492	1444	ENA	2652290 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #69645]	Whole genome shotgun	VULO00000000		GenBank	2652290 tax ID
[Ref.: #66792]	Scrofimicrobium canadense WB03_NA08	GCA_009696615	contig	GenBank	2652290 tax ID	*
[Ref.: #66792]	Actinomycetaceae bacterium WB03_NA08	2606625.3	wgs	PATRIC	2652290 tax ID	*

[Ref.: #67770]

GC-content

53.6 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinomycetaceae bacterium WB03_NA08 PATRIC: 2606625.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinomycetaceae bacterium WB03_NA08 PATRIC: 2606625.3
[Ref.: #69480]	motile	no	92.795	no
[Ref.: #69480]	gram-positive	yes	93.625	no
[Ref.: #69480]	anaerobic	no	83.221	no
[Ref.: #69480]	aerobic	no	82.369	no
[Ref.: #69480]	halophile	no	87.89	no
[Ref.: #69480]	spore-forming	no	93.393	no
[Ref.: #69480]	glucose-util	yes	84.129	no
[Ref.: #69480]	flagellated	no	98.304	no
[Ref.: #69480]	thermophile	no	97.595	yes
[Ref.: #69480]	glucose-ferment	yes	78.936	no

Availability in culture collections External links

[Ref.: #66174]

Culture collection no.

DSM 105338, JCM 34392

[Ref.: #111849]

SI-ID 397303

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66174

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105338

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68367

Automatically annotated from API 20A .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69645

David Wylensek, Thomas C. A. Hitch, Thomas Riedel, Afrizal Afrizal, Neeraj Kumar, Esther Wortmann, Tianzhe Liu, Saravanan Devendran, Till R. Lesker, Sara B. Hernández, Viktoria Heine, Eva M. Buhl, Paul M. D'Agostino, Fabio Cumbo, Thomas Fischöder, Marzena Wyschkon, Torey Looft, Valeria R. Parreira, Birte Abt, Heidi L. Doden, Lindsey Ly, João M. P. Alves, Markus Reichlin, Krzysztof Flisikowski, Laura Navarro Suarez, Anthony P. Neumann, Garret Suen, Tomas de Wouters, Sascha Rohn, Ilias Lagkouvardos, Emma Allen-Vercoe, Cathrin Spröer, Boyke Bunk, Anja J. Taverne-Thiele, Marcel Giesbers, Jerry M. Wells, Klaus Neuhaus, Angelika Schnieke, Felipe Cava, Nicola Segata, Lothar Elling, Till Strowig, Jason M. Ridlon, Tobias A. M. Gulder, Jörg Overmann, Thomas Clavel: A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. Nat. Commun. 11: 2020 ( DOI 10.1038/s41467-020-19929-w )

#111849

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397303.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Scrofimicrobium canadense in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Actinomycetaceae bacterium WB03_NA08

Actinomycetaceae bacterium WB03_NA08

Change proposal

Change proposal