Name: Ktedonosporobacter rubrisoli SCAWS-G2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159311

Type strain:

Species: Ktedonosporobacter rubrisoli

Strain Designation: SCAWS-G2

Culture col. no.: DSM 105258, CGMCC 1.16132

Strain history: <- Y. Huang; Institute of Microbiology, Chinese Academy of Sciences, Beijing, CHINA; SCAWS-G2

NCBI tax ID(s): 2509675 (species)

SI-ID 401617

DSM 105258

Special Collections

Section

Ktedonosporobacter rubrisoli SCAWS-G2 is an aerobe, spore-forming, Gram-positive bacterium that has a Pale brown pigmentation and was isolated from red soil.

filament-shaped
Gram-positive
pigmented
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Chloroflexota*
	Class	*Ktedonobacteria*
	Order	*Ktedonobacterales*
	Family	*Ktedonosporobacteraceae*
	Genus	*Ktedonosporobacter*
	Species	**Ktedonosporobacter rubrisoli**
	Full Scientific Name (LPSN)	Ktedonosporobacter rubrisoli Yan et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69565]	Gram stain	positive

[Ref.: #69565]	Cell shape	filament-shaped

[Ref.: #69565]	Motility	no

[Ref.: #69565]	Colony size	1-3 mm
[Ref.: #69565]	Colony color	pale brown
[Ref.: #69565]	Incubation period	2 days
[Ref.: #69565]	Cultivation medium used	GYM Agar

[Ref.: #69565]	Pigment production	yes
[Ref.: #69565]	Pigmentation color	Pale brown

Multimedia content

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Caption:

Medium 65 pH5 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

GYM Agar

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Culture medium growth

		Temperature
[Ref.: #66134]	growth	28 °C
[Ref.: #69565]	growth	25-45 °C
[Ref.: #69565]	optimum	28-35 °C

	pH	Kind of pH		pH
[Ref.: #69565]			optimum	5.0-6.0
[Ref.: #69565]			growth	4.0-7.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #69565]	Spore description	spore is 1.3-1.6 µm in diameter, but not motile
[Ref.: #69565]	Type of spore	spore
[Ref.: #69565]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69565]		NaCl	no	growth	2	%(w/v)
[Ref.: #69565]		NaCl		growth	1	%(w/v)

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Observation

Good growth occurs on ISP 2, GYM, DSMZ 554 and Bennett's agars. No growth occurs on ISP 4, ISP 5 or ISP 7 media. Colonies are forms branched vegetative mycelium, and produces sparse, white aerial hyphae that bear spherical spores in nutrition-poor media such as HSA5 agar. Mycelium has a diameter of approximately 0.9-1.2 µm and spores are 1.3-1.6 µm in diameter. Spores are born on short sporophores from aerial hyphae, and the dense spores form a grape-like cluster on mycelium.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69565]	arbutin ChEBI	-	assimilation
[Ref.: #69565]	casein	-	hydrolysis
[Ref.: #69565]	cellulose ChEBI	-	hydrolysis
[Ref.: #69565]	chitin ChEBI	-	hydrolysis
[Ref.: #69565]	chitosan ChEBI	+	assimilation
[Ref.: #69565]	D-fructose ChEBI	-	assimilation
[Ref.: #69565]	D-galactose ChEBI	+	assimilation
[Ref.: #69565]	D-glucose ChEBI	+	assimilation
[Ref.: #69565]	D-xylose ChEBI	-	assimilation
[Ref.: #69565]	dextrin ChEBI	+	assimilation
[Ref.: #69565]	disodium malate ChEBI	+	assimilation
[Ref.: #69565]	esculin ChEBI	-	assimilation
[Ref.: #69565]	gelatin ChEBI	-	hydrolysis
[Ref.: #69565]	hydrogen sulfide ChEBI	-	assimilation
[Ref.: #69565]	L-arabinose ChEBI	-	assimilation
[Ref.: #69565]	L-rhamnose ChEBI	-	assimilation
[Ref.: #69565]	mannitol ChEBI	-	assimilation
[Ref.: #69565]	melezitose ChEBI	+	assimilation
[Ref.: #69565]	methyl alpha-D-glucopyranoside ChEBI	+	assimilation
[Ref.: #69565]	myo-inositol ChEBI	-	assimilation
[Ref.: #69565]	nitrate ChEBI	+
[Ref.: #69565]	oxalate ChEBI	+	assimilation
[Ref.: #69565]	raffinose ChEBI	-	assimilation
[Ref.: #69565]	salicin ChEBI	+	assimilation
[Ref.: #69565]	sodium malonate ChEBI	+	assimilation
[Ref.: #69565]	sodium pyruvate ChEBI	-	assimilation
[Ref.: #69565]	sorbitol ChEBI	-	assimilation
[Ref.: #69565]	starch ChEBI	-	hydrolysis
[Ref.: #69565]	succinate ChEBI	-	assimilation
[Ref.: #69565]	sucrose ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #69565]		hydrogen sulfide ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #69565]		catalase	+	1.11.1.6

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #69565]

Fatty acid	Percentage
C16:1 2OH	26.5
C16:0	24.4
C17:0 iso	23.1
C16:0 10-methyl/ C17:1 iso w9c	14.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66134]	Sample type/isolated from	red soil
[Ref.: #66134]	Geographic location (country and/or sea, region)	Wushan (N 29° 44' -29°46', E 115° 37'-115° 41'), northern Jiangxi Province
[Ref.: #66134]	Country	China
[Ref.: #66134]	Country ISO 3 Code	CHN
[Ref.: #66134]	Continent	Asia
[Ref.: #66134]	Geographic location	29.7333°/115.6170°

[Ref.: #69565]	Sample type/isolated from	the surface layer red soils sampled at Wushan, northern Jiangxi Province, PR China.
[Ref.: #69565]	Geographic location (country and/or sea, region)	Wushan, northern Jiangxi Province
[Ref.: #69565]	Country	China
[Ref.: #69565]	Country ISO 3 Code	CHN
[Ref.: #69565]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66134]	Ktedonosporobacter rubrisoli strain SCAWS-G2 16S ribosomal RNA gene, partial sequence	KY427895	1480	GenBank ENA	2509675 tax ID
[Ref.: #66134]	Ktedonosporobacter rubrisoli strain SCAWS-G2 16S ribosomal RNA gene, partial sequence	KY427896	1480	GenBank ENA	2509675 tax ID
[Ref.: #66134]	Ktedonosporobacter rubrisoli strain SCAWS-G2 16S ribosomal RNA gene, partial sequence	MK318920	1474	GenBank ENA	2509675 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #69565]	genome sequence	CP035758		GenBank ENA	2509675 tax ID
[Ref.: #66792]	Ktedonosporobacter rubrisoli SCAWS-G2	GCA_004208415	complete	GenBank ENA	2509675 tax ID	*

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GC-content

51.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ktedonosporobacter rubrisoli SCAWS-G2 NCBI: GCA_004208415.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	50	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ktedonosporobacter rubrisoli SCAWS-G2 NCBI: GCA_004208415.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	77.561	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.91	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	76.599	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	63.406	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	85.093	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	82.938	no

Availability in culture collections External links

[Ref.: #66134]

Culture collection no.

DSM 105258, CGMCC 1.16132

[Ref.: #111810]

SI-ID 401617

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ktedonosporobacter rubrisoli gen. nov., sp. nov., a novel representative of the class Ktedonobacteria, isolated from red soil, and proposal of Ktedonosporobacteraceae fam. nov.	Yan B, Guo X, Liu M, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003864	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66134

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105258

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69565

Bingfa Yan, Xiaoxuan Guo, Minghao Liu and Ying Huang: Ktedonosporobacter rubrisoli gen. nov., sp. nov., a novel representative of the class Ktedonobacteria, isolated from red soil, and proposal of Ktedonosporobacteraceae fam. nov.. IJSEM 70: 2019 ( DOI 10.1099/ijsem.0.003864 )

#111810

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401617.1 )

* These data were automatically processed and therefore are not curated

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