Name: Sphingobium aromaticivastans UCM-25
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159193

Type strain:

Species: Sphingobium aromaticivastans

Strain Designation: UCM-25

Culture col. no.: DSM 105181, KACC 19288

Strain history: <- J. Kim, Kyonggi University, Suwon, Republic of Korea <- T. M. Nguyen, Kyonggi-University

NCBI tax ID(s): 1778665 (species)

Section

Sphingobium aromaticivastans UCM-25 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingobium*
	Species	"Sphingobium aromaticivastans"
	Full Scientific Name (LPSN)	Sphingobium aromaticivastans Nguyen and Kim 2019

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

DSM 105181 on medium 1 at 28 °C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66016]			growth	28 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68372]	amygdalin ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	arbutin ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	cellobiose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-arabinose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-arabitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-fructose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-fucose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-galactose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-glucose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-lyxose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-mannitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-mannose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-ribose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-tagatose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-xylose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	erythritol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	esculin ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	galactitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	gentiobiose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	gluconate ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	glycerol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	glycogen ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	inulin ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	L-arabinose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	L-arabitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	L-fucose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	L-rhamnose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	L-sorbose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	L-xylose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	lactose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	maltose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	melezitose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	melibiose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	methyl alpha-D-glucopyranoside ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	methyl alpha-D-mannoside ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	methyl beta-D-xylopyranoside ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	myo-inositol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	N-acetylglucosamine ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	Potassium 2-ketogluconate ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	Potassium 5-ketogluconate ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	raffinose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	ribitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	salicin ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	sorbitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	starch ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	sucrose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	trehalose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	turanose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	xylitol ChEBI	-	assimilation	* from API 50CH assim
	Only first 10 entries are displayed. Click here to see all.

API® 50CH assim:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Assimilation of glycerolGLY	Assimilation of erythritolERY	Assimilation of D-arabinoseDARA	Assimilation of L-arabinoseLARA	Assimilation of D-riboseRIB	Assimilation of D-xyloseDXYL	Assimilation of L-xyloseLXYL	Assimilation of D-adonitolADO	Assimilation of methyl beta-D-xylopyranosideMDX	Assimilation of D-galactoseGAL	Assimilation of D-glucoseGLU	Assimilation of D-fructoseFRU	Assimilation of D-mannoseMNE	Assimilation of L-sorboseSBE	Assimilation of L-rhamnoseRHA	Assimilation of dulcitolDUL	Assimilation of inositolINO	Assimilation of D-mannitolMAN	Assimilation of sorbitolSOR	Assimilation of methyl alpha-D-mannopyranosideMDM	Assimilation of methyl alpha-D-glucopyranosideMDG	Assimilation of N-acetyl-glucosamineNAG	Assimilation of amygdalinAMY	Assimilation of arbutinARB	Assimilation of esculinESC	Assimilation of salicinSAL	Assimilation of cellobioseCEL	Assimilation of maltoseMAL	Assimilation of lactoseLAC	Assimilation of melibioseMEL	Assimilation of sucroseSAC	Assimilation of trehaloseTRE	Assimilation of inulinINU	Assimilation of melezitoseMLZ	Assimilation of raffinoseRAF	Assimilation of starchAMD	Assimilation of glycogenGLYG	Assimilation of xylitolXLT	Assimilation of gentiobioseGEN	Assimilation of turanoseTUR	Assimilation of D-lyxoseLYX	Assimilation of D-tagatoseTAG	Assimilation of D-fucoseDFUC	Assimilation of L-fucoseLFUC	Assimilation of D-arabitolDARL	Assimilation of L-arabitolLARL	Assimilation of gluconateGNT	Assimilation of 2-Ketogluconate2KG	Assimilation of 5-Ketogluconate5KG
[Ref.: #66016]	101	-	-	-	-	+	-	-	-	-	-	+	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66016]	Sample type/isolated from	soil
[Ref.: #66016]	Geographic location (country and/or sea, region)	Gokgyo-ri, Yeomchi-eup, Asan-si, Chungcheongnam-do (36° 48' 35'' N, 126° 56' 56'' E)
[Ref.: #66016]	Country	Republic of Korea
[Ref.: #66016]	Country ISO 3 Code	KOR
[Ref.: #66016]	Continent	Asia
[Ref.: #66016]	Geographic location	37.3497°/127.6450°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

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Global distribution of 16S sequence KU052683 (>99% sequence identity) for Sphingobium from Microbeatlas

Aquatic Samples	669
Soil Samples	1388
Animal Samples	344
Plant Samples	583
Total Samples	2984

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66016]	Sphingobium aromaticivastans 16S ribosomal RNA gene, partial sequence	KU052683	1440	ENA	1778665 tax ID

Availability in culture collections External links

[Ref.: #66016]

Culture collection no.

DSM 105181, KACC 19288

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Sphingobium aromaticivastans sp. nov., a novel aniline- and benzene-degrading, and antimicrobial compound producing bacterium.	Nguyen TM, Kim J	Arch Microbiol	10.1007/s00203-018-1611-2	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66016

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105181

#68372

Automatically annotated from API 50CH assim .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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