Aerosticca soli (DSM 105662, NBRC 112897, Dysh456)

Name: Aerosticca soli (DSM 105662, NBRC 112897, Dysh456)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159185

Type strain

Strain Designation Dysh456

Culture col. no. DSM 105662 NBRC 112897 Dysh456

NCBI tax ID(s) 2010829

Special Collections DSMZ Literature strains

History DSMZ <- M. Watanabe, Inst. Low Temperature Sci., Hokkaido Univ., Sapporo, Japan; Dysh456

Links

Aerosticca soli Dysh456 is an aerobe, chemoorganotroph, Gram-negative bacterium that was isolated from crude oil-contaminated soil.

Gram-negative motile rod-shaped aerobe chemoorganotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402228

NBRC 112897,DSM 105662

@ref 20215

Last LPSN update 2026-05-29 08:44:08

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Rhodanobacteraceae

Genus Aerosticca

Species Aerosticca soli

Full scientific name Aerosticca soli Watanabe et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
68269	negative	2-5 µm	0.8 µm	rod-shaped
125438	negative					99.994

Colony morphology

@ref	Colony color	Medium used
68269	White	Reasoner's 2A agar (R2A)

Multimedia

@ref:	66008
multimedia content:	DSM_105662.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_105662.jpg
caption:	DSM 105662 on medium 830 at 45 °C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66008	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
66008	positive	growth	45
68269	positive	growth	13-48
68269	positive	optimum	42-45

Culture pH

@ref	Ability	Type	PH
68269	positive	optimum	7
68269	positive	growth	4.3-7.9

Physiology and metabolism

Oxygen tolerance

68269

Oxygen toleranceaerobe

Nutrition type

68269

Typechemoorganotroph

Spore formation

@ref	Spore formation	Confidence
68269
125438		93.343

Halophily

@ref	Salt	Growth	Tested relation	Concentration
68269	NaCl	positive	growth	0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68269	64552 ChEBI	2-hydroxybutyrate	+	respiration
68269	28644 ChEBI	2-oxopentanoate	+	respiration
68269	40585 ChEBI	alpha-cyclodextrin	+	respiration
68269	17925 ChEBI	alpha-D-glucose	+	respiration
68269	27613 ChEBI	amygdalin	-	builds acid from
68269	18305 ChEBI	arbutin	-	builds acid from
68269	8295 ChEBI	beta-hydroxybutyrate	+	respiration
68269	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
68269	17057 ChEBI	cellobiose	+	respiration
68269	17057 ChEBI	cellobiose	-	builds acid from
68269	17108 ChEBI	D-arabinose	-	builds acid from
68269	18333 ChEBI	D-arabitol	-	builds acid from
68269	15824 ChEBI	D-fructose	+	respiration
68269	15824 ChEBI	D-fructose	-	builds acid from
68269	28847 ChEBI	D-fucose	-	builds acid from
68269	12936 ChEBI	D-galactose	-	builds acid from
68269	17634 ChEBI	D-glucose	-	builds acid from
68269	62318 ChEBI	D-lyxose	-	builds acid from
68269	16899 ChEBI	D-mannitol	-	builds acid from
68269	16024 ChEBI	D-mannose	+	respiration
68269	16024 ChEBI	D-mannose	-	builds acid from
68269	16988 ChEBI	D-ribose	-	builds acid from
68269	17924 ChEBI	D-sorbitol	-	builds acid from
68269	16443 ChEBI	D-tagatose	-	builds acid from
68269	65327 ChEBI	D-xylose	-	builds acid from
68269	23652 ChEBI	dextrin	+	respiration
68269	16991 ChEBI	dna	-	hydrolysis
68269	17113 ChEBI	erythritol	+	respiration
68269	17113 ChEBI	erythritol	-	builds acid from
68269		esculin ferric citrate	-	builds acid from
68269	16813 ChEBI	galactitol	-	builds acid from
68269	28066 ChEBI	gentiobiose	-	builds acid from
68269	17754 ChEBI	glycerol	-	builds acid from
68269	28087 ChEBI	glycogen	+	respiration
68269	28087 ChEBI	glycogen	-	builds acid from
68269	73804 ChEBI	glycyl L-aspartic acid	+	respiration
68269	73784 ChEBI	glycyl-l-glutamate	+	respiration
68269	17596 ChEBI	inosine	+	respiration
68269	15443 ChEBI	inulin	-	builds acid from
68269	17240 ChEBI	itaconate	+	respiration
68269	21217 ChEBI	L-alaninamide	+	respiration
68269	16977 ChEBI	L-alanine	+	respiration
68269	73786 ChEBI	L-alanylglycine	+	respiration
68269	30849 ChEBI	L-arabinose	-	builds acid from
68269	18403 ChEBI	L-arabitol	-	builds acid from
68269	29991 ChEBI	L-aspartate	+	respiration
68269	18287 ChEBI	L-fucose	+	respiration
68269	18287 ChEBI	L-fucose	-	builds acid from
68269	29985 ChEBI	L-glutamate	+	respiration
68269	17203 ChEBI	L-proline	+	respiration
68269	62345 ChEBI	L-rhamnose	-	builds acid from
68269	17115 ChEBI	L-serine	+	respiration
68269	17266 ChEBI	L-sorbose	-	builds acid from
68269	65328 ChEBI	L-xylose	-	builds acid from
68269	17716 ChEBI	lactose	-	builds acid from
68269	17306 ChEBI	maltose	+	respiration
68269	17306 ChEBI	maltose	-	builds acid from
68269	6731 ChEBI	melezitose	-	builds acid from
68269	28053 ChEBI	melibiose	-	builds acid from
68269	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
68269	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
68269	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
68269	51850 ChEBI	methyl pyruvate	+	respiration
68269	75146 ChEBI	monomethyl succinate	+	respiration
68269	17268 ChEBI	myo-inositol	-	builds acid from
68269	59640 ChEBI	N-acetylglucosamine	+	respiration
68269	59640 ChEBI	N-acetylglucosamine	-	builds acid from
68269		potassium 2-dehydro-D-gluconate	-	builds acid from
68269		potassium 5-dehydro-D-gluconate	-	builds acid from
68269	32032 ChEBI	potassium gluconate	-	builds acid from
68269	17272 ChEBI	propionate	+	respiration
68269	16634 ChEBI	raffinose	-	builds acid from
68269	15963 ChEBI	ribitol	-	builds acid from
68269	17814 ChEBI	salicin	-	builds acid from
68269		skimmed milk	-	hydrolysis
68269	28017 ChEBI	starch	+	hydrolysis
68269	28017 ChEBI	starch	-	builds acid from
68269	143136 ChEBI	succinamate	+	respiration
68269	17992 ChEBI	sucrose	-	builds acid from
68269	27082 ChEBI	trehalose	+	respiration
68269	27082 ChEBI	trehalose	-	builds acid from
68269	32528 ChEBI	turanose	+	respiration
68269	32528 ChEBI	turanose	-	builds acid from
68269	16704 ChEBI	uridine	+	respiration
68269	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68269	17997 ChEBI	dinitrogen
68269	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68269	acid phosphatase	+	3.1.3.2
68269	alkaline phosphatase	+	3.1.3.1
68269	alpha-fucosidase	-	3.2.1.51
68269	alpha-galactosidase	-	3.2.1.22
68269	alpha-mannosidase	-	3.2.1.24
68269	arginine dihydrolase	+	3.5.3.6
68269	beta-glucosidase	+	3.2.1.21
68269	beta-glucuronidase	-	3.2.1.31
68269	catalase	-	1.11.1.6
68269	chymotrypsin	-	3.4.4.5
68269	cystine arylamidase	+	3.4.11.3
68269	cytochrome oxidase	+	1.9.3.1
68269	esterase Lipase (C 8)	+
68269	leucine arylamidase	+	3.4.11.1
68269	lipase (C 14)	+
68269	nitrate reductase	-	1.7.99.4
68269	trypsin	-	3.4.21.4
68269	urease	-	3.5.1.5
68269	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

68269

Fatty acid	Percentage
C15:0 iso	42.5
C17:0 iso	15.3
C17:1 iso w9c / C16:0 10-methyl	13.7
C13:0 iso	5
C15:0 anteiso	4.4
C16:0 iso	3
C11:0 iso	2.6
C11:0 iso 3-OH	2.4
C13:0 iso 3OH	2.1
C16:1 w6c/C16:1 w7c	1.8
C16:0	1.5
C17:0 anteiso	0.8
C14:0 iso	0.7
C18:0	0.7
C15:1 iso G	0.7
C18:1 w9c	0.6
C17:0 iso 3OH	0.5
C13:0 anteiso	0.4
C18:1 w5c	0.3
C14:0	0.3
C15:1 iso H / C13:0 3OH	0.3
C17:0 cyclo	0.3
C18:2 w6,9c / C18:0 anteiso	0.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	#Oil (Fuel)
#Engineered	#Industrial	#Oil reservoir
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
66008	crude oil-contaminated soil		Ishikari oil field, Hokkaido (43° 28' N, 141° 48' E)	Japan	JPN	Asia	43.4667	141.8 43.4667/141.8
68269	crude oil-contaminated soil from an oil filed	2016-11-01	Ishikari oil field on Hokkaido	Japan	JPN	Asia	43.4667	141.8 43.4667/141.8	R2A broth	4 days	45

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
68269	ASM396703v1 assembly for Aerosticca soli Dysh456	complete	GCA_003967035	2010829.3	2989055730	2010829	99.1

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66008	Aerosticca soli gene for 16S ribosomal RNA, partial sequence	LC276682	1483		2010829

GC content

@ref	GC-content (mol%)	Method
68269	68	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aerosticca soli Dysh456
NCBI: GCA_003967035.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.99	yes
125438	anaerobic	anaerobicⓘ	no	93.48	no
125438	aerobic	aerobicⓘ	yes	86.34	yes
125438	spore-forming	spore-formingⓘ	no	93.34	yes
125438	thermophilic	thermophileⓘ	no	91.47	no
125438	flagellated	motile2+ⓘ	yes	53.84	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aerosticca soli gen. nov., sp. nov., an aerobic gammaproteobacterium isolated from crude oil-contaminated soil.	Watanabe M, Kojima H, Fukui M	Arch Microbiol	10.1007/s00203-020-01819-w	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66008	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105662
#68269	Miho Watanabe, Hisaya Kojima & Manabu Fuku: Aerosticca soli gen. nov., sp. nov., an aerobic gammaproteobacterium isolated from crude oil-contaminated soil. Arch Microbiol 202: 1069 - 1076 2020 ( DOI 10.1007/s00203-020-01819-w )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aerosticca soli (DSM 105662, NBRC 112897, Dysh456)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003967035

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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